View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19543_low_10 (Length: 409)
Name: NF19543_low_10
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19543_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 32812474 - 32812875
Alignment:
| Q |
1 |
atgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32812474 |
atgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaac |
32812573 |
T |
|
| Q |
101 |
ggcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagtat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32812574 |
ggcgtaagcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagtat |
32812673 |
T |
|
| Q |
201 |
gcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggagt |
300 |
Q |
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| T |
32812674 |
gcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggagt |
32812773 |
T |
|
| Q |
301 |
atccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttcccttcttttcacggaggtgaaggtggtgatga |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32812774 |
atccatgggggaagcctaagtattgttgtccagtggtttatcataagaaggatattatactattgttcccttcttttcacggagttgaaggtggtgatga |
32812873 |
T |
|
| Q |
401 |
tg |
402 |
Q |
| |
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|| |
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| T |
32812874 |
tg |
32812875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 32830004 - 32830399
Alignment:
| Q |
1 |
atgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaac |
100 |
Q |
| |
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|||||||||| || ||||| | ||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
32830004 |
atgatcctaatagatcatctattattttatatgcggttgatatacgttcaagattgaatcctccattgccgagagcgtacactgggaatgcagtattaac |
32830103 |
T |
|
| Q |
101 |
ggcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||| ||||||| ||| |
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| T |
32830104 |
agcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaattttcaaggttggtggagatggtggaagagggttcaagaagaatgagtgatgaatat |
32830203 |
T |
|
| Q |
201 |
gcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggagt |
300 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32830204 |
gcaagatctattattgattggggagagttgtataatggttttccaaatggggatgttttggtgtcttcatggtggaggctagggtttgaagaggtggagt |
32830303 |
T |
|
| Q |
301 |
atccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttcccttcttttcacggaggtgaaggtggtg |
396 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| || ||||||||| | |||||||||||||||| |
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| T |
32830304 |
atccatgggggaagcctaagtattgttgtcctgtggtttatcataggaaggatattatactattatttccttcttttaatggaggtgaaggtggtg |
32830399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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