View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19543_low_11 (Length: 365)

Name: NF19543_low_11
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19543_low_11
NF19543_low_11
[»] chr5 (10 HSPs)
chr5 (196-363)||(23074463-23074630)
chr5 (1-111)||(23074905-23075015)
chr5 (112-213)||(23074774-23074875)
chr5 (122-183)||(2413220-2413281)
chr5 (130-179)||(2414381-2414430)
chr5 (1-66)||(4268217-4268282)
chr5 (1-66)||(12660434-12660499)
chr5 (1-66)||(15988753-15988818)
chr5 (1-66)||(20205073-20205138)
chr5 (115-172)||(27179135-27179192)
[»] chr4 (11 HSPs)
chr4 (114-183)||(7982762-7982831)
chr4 (1-66)||(29655670-29655735)
chr4 (122-183)||(28910949-28911010)
chr4 (1-82)||(55735108-55735192)
chr4 (1-66)||(43840310-43840375)
chr4 (1-66)||(49951431-49951496)
chr4 (1-66)||(51259533-51259598)
chr4 (1-66)||(51734976-51735041)
chr4 (132-183)||(2357712-2357763)
chr4 (1-60)||(18442151-18442210)
chr4 (122-183)||(47806528-47806588)
[»] chr7 (7 HSPs)
chr7 (122-183)||(3868187-3868248)
chr7 (115-183)||(36718982-36719049)
chr7 (1-66)||(16732051-16732116)
chr7 (1-66)||(17710185-17710250)
chr7 (1-66)||(3601770-3601835)
chr7 (1-66)||(29200959-29201024)
chr7 (138-183)||(36718252-36718297)
[»] chr1 (12 HSPs)
chr1 (1-66)||(36733814-36733879)
chr1 (1-66)||(44602870-44602935)
chr1 (115-183)||(14939015-14939083)
chr1 (115-183)||(14944259-14944327)
chr1 (115-183)||(50616292-50616360)
chr1 (115-183)||(50624120-50624188)
chr1 (115-165)||(14949050-14949100)
chr1 (115-183)||(18527056-18527124)
chr1 (1-60)||(44527377-44527436)
chr1 (122-183)||(270628-270689)
chr1 (122-166)||(1547703-1547747)
chr1 (130-178)||(42105669-42105717)
[»] chr6 (1 HSPs)
chr6 (1-66)||(28107257-28107322)
[»] chr2 (4 HSPs)
chr2 (122-183)||(35413587-35413648)
chr2 (4-46)||(35158852-35158894)
chr2 (1-66)||(11292067-11292131)
chr2 (1-58)||(12130642-12130699)
[»] chr8 (3 HSPs)
chr8 (115-183)||(16939097-16939165)
chr8 (1-66)||(23854050-23854115)
chr8 (1-66)||(33642768-33642833)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 196 - 363
Target Start/End: Complemental strand, 23074630 - 23074463
Alignment:
Q  196 aaaagcaatttcatataaattaaaatctctcattcaaatcttcacatattctaacaatgttttataaatttgtgtgaagctgaatatttttcgggtgtaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  23074630 aaaagcaatttcatataaattaaaatctctcattcaaatcttcacatattctaacaatgttttataaatttgtgtgaagctgaatatttttctgctgtaa 23074531  T
Q  296 ctagaaaaatcataatttaggatttaaaagattttttgagattaaaaataattattgcatgaacatat 363  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  23074530 ctagaaaaatcataatttaggatttaaaagatttttttagattaaaaataattattgcatgaatatat 23074463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 23075015 - 23074905
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagagatgaattggactcgaatgcaattattgaaaaata 100  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  23075015 tactataaacaataacatagaattatgaatcaccatggaccgaagacgataaagcttgcactagagatgaattggactcgaaggcaattattggaaaata 23074916  T
Q  101 ttttatttgat 111  Q
    |||||||||||    
T  23074915 ttttatttgat 23074905  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 23074875 - 23074774
Alignment:
Q  112 attatgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaaatttatcttaataaaagcaatttcatat 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  23074875 attatgtgtctaattgggtgattttaattggttgataatgtaaaattgttttacattctcagtctattctaaatttatcttaataaaagcaatttcatat 23074776  T
Q  212 aa 213  Q
    ||    
T  23074775 aa 23074774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 2413281 - 2413220
Alignment:
Q  122 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    ||||||| |||||||||||| | || |||||||| || ||||||||||||| ||||||||||    
T  2413281 taattggatgattttaattgatcgacaatgtaaatttattttacactgtcagtctattctaa 2413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 2414381 - 2414430
Alignment:
Q  130 tgattttaattggttgataatgtaaaattgttttacactgtcactctatt 179  Q
    ||||||||||||||||| |||||||| || ||||||||||||| ||||||    
T  2414381 tgattttaattggttgacaatgtaaacttattttacactgtcagtctatt 2414430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4268282 - 4268217
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| |||||||||  |||||| ||||| ||| |||||||| |||||||| |||||    
T  4268282 tactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgcactagag 4268217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12660499 - 12660434
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| ||||||||| ||||||| | ||| ||||||| |||| |||||||| |||||    
T  12660499 tactagaaacaatatcatagaattctgaatcaccgtggcccgaagacgatagagcttgcactagag 12660434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15988753 - 15988818
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    ||||||||||||||||||||||||  |||||| ||||| | ||||| |||| || ||||| |||||    
T  15988753 tactagaaacaataacatagaattccgaatcaccatggcctgaagacgatagagattgcactagag 15988818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20205138 - 20205073
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| ||||||||| ||||||| ||||  ||| ||| |||| |||||||| |||||    
T  20205138 tactagaaacaatagcatagaattttgaatcaccatgacccggagaggatagagcttgcactagag 20205073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 27179135 - 27179192
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtca 172  Q
    |||| ||||||||  ||||||||||| ||||||| ||||||||| ||||||| |||||    
T  27179135 atgtatctaattgaatgattttaattagttgatagtgtaaaattattttacattgtca 27179192  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 7982762 - 7982831
Alignment:
Q  114 tatgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||    
T  7982762 tatgtgtctaattgggtgattttaattgattgataatgtaaagttgttttacattgtcagtctattctaa 7982831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29655670 - 29655735
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||| |||||    
T  29655670 tactagaaacaataacatagaattctgaatcaccatggcccgaagatgatagagcttgcactagag 29655735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 28910949 - 28911010
Alignment:
Q  122 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    ||||||| |||||||||| |||||||| |||||| |||||||||||||||| ||||||||||    
T  28910949 taattggatgattttaatcggttgatagtgtaaatttgttttacactgtcagtctattctaa 28911010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 55735192 - 55735108
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattag---agatgaattggactcgaa 82  Q
    |||||||||||||| ||||||||| ||||||| ||||| ||||||| |||| |||||||| |||   |||||||| |||||||||    
T  55735192 tactagaaacaatagcatagaattctgaatcaccatggtccgaagacgatagagcttgcactagagtagatgaatcggactcgaa 55735108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43840310 - 43840375
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| |||||||||  |||||| ||||| ||||||| |||| ||||||||||||||    
T  43840310 tactagaaacaatagcatagaattccgaatcaccatggtccgaagacgatagagcttgcattagag 43840375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 49951496 - 49951431
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| || |||||| ||||||| || || ||||||||||||||||||||| |||||    
T  49951496 tactagaaacaatagcagagaattctgaatcaccacggcccgaagatgataaagcttgcactagag 49951431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51259533 - 51259598
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    ||||||||||||||||||| |||| ||||||| ||||| ||||||| ||||  ||||||| |||||    
T  51259533 tactagaaacaataacataaaattctgaatcaccatggcccgaagacgatagcgcttgcactagag 51259598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51734976 - 51735041
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| ||||||||||||||||| ||||| ||  ||| |||| |||||||| |||||    
T  51734976 tactagaaacaatatcatagaattatgaatcaccatggtccagagacgatagagcttgcactagag 51735041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 2357763 - 2357712
Alignment:
Q  132 attttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    ||||||||||||||||| | |||| |||||||||||||| | ||||||||||    
T  2357763 attttaattggttgatagtctaaagttgttttacactgttagtctattctaa 2357712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18442151 - 18442210
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgca 60  Q
    |||||||||||||| ||||||||| ||||||| ||||| || |||| |||| ||||||||    
T  18442151 tactagaaacaatagcatagaattctgaatcaccatgggccaaagacgatatagcttgca 18442210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 47806588 - 47806528
Alignment:
Q  122 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    |||||| ||||||||||||||||||   |||||| ||||||||| |||||| ||||||||||    
T  47806588 taattgagtgattttaattggttgacggtgtaaa-ttgttttacgctgtcagtctattctaa 47806528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 3868248 - 3868187
Alignment:
Q  122 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  3868248 taatttggtgattttaattggttgatagtgcaaaattgttttacactgtcagtctattctaa 3868187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 36718982 - 36719049
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    |||| ||||||||| ||| ||||||||||||||  ||||||||||||||||| ||||| ||||||||||    
T  36718982 atgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttaca-tgtcagtctattctaa 36719049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16732116 - 16732051
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| || |||||| ||||||| ||||| ||| |||||||| |||||||| |||||    
T  16732116 tactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagag 16732051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17710250 - 17710185
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| || |||||| ||||||| ||||| ||| |||||||| |||||||| |||||    
T  17710250 tactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagag 17710185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3601835 - 3601770
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| |||| |||| ||||||| ||||| ||  ||| ||||||||||||| |||||    
T  3601835 tactagaaacaatagcataaaattctgaatcaccatggtccagagacgataaagcttgcactagag 3601770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29200959 - 29201024
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| ||||||||| ||||||| ||||| ||  ||| |||| |||||||| |||||    
T  29200959 tactagaaacaatagcatagaattctgaatcaccatggcccagagacgatagagcttgcactagag 29201024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 36718297 - 36718252
Alignment:
Q  138 attggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    ||||||||||  ||||||||||||||||| ||||| ||||||||||    
T  36718297 attggttgatggtgtaaaattgttttacaatgtcagtctattctaa 36718252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36733879 - 36733814
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||| |||||    
T  36733879 tactagaaacaataacatagaattatgaatcatcatggcccggagacgatatagcttgcactagag 36733814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44602935 - 44602870
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| ||||||||| ||||||| ||||| ||| |||||||| |||||||| |||||    
T  44602935 tactagaaacaatagcatagaattttgaatcaccatggcccggagatgatagagcttgcactagag 44602870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 14939083 - 14939015
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    |||| ||||||||  ||||||||||| ||||||| ||||||||||||||||| ||||  ||||||||||    
T  14939083 atgtgtctaattgtatgattttaattagttgatagtgtaaaattgttttacattgtcgatctattctaa 14939015  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 14944327 - 14944259
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    |||| ||||||||  ||||||||||| ||||||| ||||||||||||||||| ||||  ||||||||||    
T  14944327 atgtgtctaattgtatgattttaattagttgatagtgtaaaattgttttacattgtcgatctattctaa 14944259  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 50616292 - 50616360
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    |||| ||||||| | ||||||||||||||||||| |||||| |||||||||||| ||| | ||||||||    
T  50616292 atgtgtctaatttgatgattttaattggttgatagtgtaaagttgttttacactatcaatttattctaa 50616360  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 50624120 - 50624188
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    |||| ||||||| | ||||||||||||||||||| |||||| |||||||||||| ||| | ||||||||    
T  50624120 atgtgtctaatttgatgattttaattggttgatagtgtaaagttgttttacactatcaatttattctaa 50624188  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 14949100 - 14949050
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttac 165  Q
    |||| ||||||||  ||||||||||| ||||||||||||||||||||||||    
T  14949100 atgtgtctaattgtatgattttaattagttgataatgtaaaattgttttac 14949050  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 18527124 - 18527056
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    |||| ||||||||  ||||||||||||||||||| |||||| ||||||  |||||| | ||||||||||    
T  18527124 atgtgtctaattgaatgattttaattggttgatagtgtaaagttgtttcgcactgttagtctattctaa 18527056  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44527436 - 44527377
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgca 60  Q
    |||||||||||||| |||||||||  |||||| ||||| ||| |||||||| ||||||||    
T  44527436 tactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgca 44527377  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 270628 - 270689
Alignment:
Q  122 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    ||||||| |||||||||||| |||||| |||||| || |||||||| || | ||||||||||    
T  270628 taattggatgattttaattgtttgatagtgtaaacttattttacaccgttagtctattctaa 270689  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 1547747 - 1547703
Alignment:
Q  122 taattgggtgattttaattggttgataatgtaaaattgttttaca 166  Q
    |||||| ||||||||||||| |||||| |||||| ||||||||||    
T  1547747 taattgagtgattttaattgattgatagtgtaaagttgttttaca 1547703  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 42105717 - 42105669
Alignment:
Q  130 tgattttaattggttgataatgtaaaattgttttacactgtcactctat 178  Q
    ||||||||||||||||| | |||||| |||||||||| ||||| |||||    
T  42105717 tgattttaattggttgacagtgtaaacttgttttacattgtcagtctat 42105669  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28107322 - 28107257
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||||||||||||| ||||||| ||||| ||| ||| |||| |||||||| |||||    
T  28107322 tactagaaacaataacatagaattctgaatcaccatggcccggagacgatagagcttgcactagag 28107257  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 35413648 - 35413587
Alignment:
Q  122 taattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    ||||||| ||| ||||||||||||||| |||||| |||||||||||||| | ||||||||||    
T  35413648 taattggatgaatttaattggttgatagtgtaaagttgttttacactgttagtctattctaa 35413587  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 35158852 - 35158894
Alignment:
Q  4 tagaaacaataacatagaattatgaatcatcatggaccgaaga 46  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||    
T  35158852 tagaaacaatagcatagaattctgaatcatcatggcccgaaga 35158894  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11292067 - 11292131
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    ||||| ||||||||||||| |||| ||||||||||||| ||||| | |||| |||||||| |||||    
T  11292067 tactataaacaataacataaaattttgaatcatcatgg-ccgaaaacgatagagcttgcactagag 11292131  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12130642 - 12130699
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttg 58  Q
    ||||||||| |||| ||||||||| ||||||| ||||  |||||||||||| ||||||    
T  12130642 tactagaaataatagcatagaattctgaatcaccatgtcccgaagatgatagagcttg 12130699  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 16939097 - 16939165
Alignment:
Q  115 atgtctctaattgggtgattttaattggttgataatgtaaaattgttttacactgtcactctattctaa 183  Q
    |||| |||||||  |||||||||||||||||| | ||||||||||||||||||| ||  ||||||||||    
T  16939097 atgtgtctaatttagtgattttaattggttgacagtgtaaaattgttttacactatcgatctattctaa 16939165  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23854115 - 23854050
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| ||||||||| ||||||| ||||| ||| ||| |||| |||||||| |||||    
T  23854115 tactagaaacaatagcatagaattctgaatcaccatggcccggagacgatagagcttgcactagag 23854050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33642768 - 33642833
Alignment:
Q  1 tactagaaacaataacatagaattatgaatcatcatggaccgaagatgataaagcttgcattagag 66  Q
    |||||||||||||| ||| ||||| ||||||| ||||| ||| ||| || | ||||||||||||||    
T  33642768 tactagaaacaatatcattgaattctgaatcaccatggcccggagacgacagagcttgcattagag 33642833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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