View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19543_low_12 (Length: 340)
Name: NF19543_low_12
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19543_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 739018 - 738713
Alignment:
| Q |
13 |
aatatctgttttaaattgcggtaaaatgcaggcaaatgcggcttatatctgaccgtaattgcaatttatttgacctctaaaatcgttatgttacggccac |
112 |
Q |
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| T |
739018 |
aatatctgttttaaattgcggtaaaatgcaggcaaatgcggcttatatctgaccgtaattgcaatttatttgacctctaaaatcgttatgttacggccac |
738919 |
T |
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| Q |
113 |
aatttaaagtatttctaagaggcatttaggtatatatgttttgttattatgttcatggccgggtgaaagtgnnnnnnnnnnnnnnnnnnnnnnntttggt |
212 |
Q |
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| T |
738918 |
aatttaaactatttctaagaggcatttaggtatatatgttttgttattatgttcat----gggtgaaagtgaaaaaaagaaaagaactaaaaaatttggt |
738823 |
T |
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| Q |
213 |
aatttgtttcaccagtttttgaatacaattctcaattccacaatgtgatgcgtgtgacacacgctatgtacaagtcatgcaatggatcatcccctttaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
738822 |
aatttgtttcaccagtttttgaatacaattctcaattccacaatgtgatgcgtgtgacacacgctatgtacaagtcatgcaatggatcatcccctttaac |
738723 |
T |
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| Q |
313 |
aaccttctcc |
322 |
Q |
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|||||||||| |
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| T |
738722 |
aaccttctcc |
738713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 47219672 - 47219729
Alignment:
| Q |
246 |
aattccacaatgtgatgcgtgtgacacacgctatgtacaagtcatgcaatggatcatc |
303 |
Q |
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| T |
47219672 |
aattccacaatgtgatgcgagtgacacatgccatgtacaagtcatgcaatgcatcatc |
47219729 |
T |
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