View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19543_low_14 (Length: 257)
Name: NF19543_low_14
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19543_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 13514806 - 13515053
Alignment:
| Q |
1 |
gttacagattctgataaccttatcccaaaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaactta |
100 |
Q |
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| T |
13514806 |
gttacagattctgataaccttatcccaaaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaactta |
13514905 |
T |
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| Q |
101 |
cttttgttgaaggtcggtataaatatatttattttacttttattgtcaaatattaataattagttgttacgttagtgtttnnnnnnnttatgttttcgac |
200 |
Q |
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| T |
13514906 |
cttttgttgaaggtcggtataaatatatttattttacttttattgtcaaatattaataattagttgttacgttagtgtttaaaaaaattatgttttcgac |
13515005 |
T |
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| Q |
201 |
atcgagtctaagttcatcgtatgaactatacctagtaatgctgatgatgt |
250 |
Q |
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| T |
13515006 |
atcgagtctaagttca--gtatgaactatacctagtaatgctgatgatgt |
13515053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13500836 - 13500965
Alignment:
| Q |
1 |
gttacagattctgataaccttatcccaaaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaactta |
100 |
Q |
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| T |
13500836 |
gttacagatgctgacaaccttatcccaaaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactca |
13500935 |
T |
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| Q |
101 |
cttttgttgaaggtcggtataaatatattt |
130 |
Q |
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| T |
13500936 |
ctttcgttgaaggtcagtataaatatattt |
13500965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13484129 - 13484242
Alignment:
| Q |
1 |
gttacagattctgataaccttatcccaaaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaactta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
13484129 |
gttacagattctgataaccttatcccaaaggttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaaactta |
13484228 |
T |
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| Q |
101 |
cttttgttgaaggt |
114 |
Q |
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|||| ||||||||| |
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| T |
13484229 |
ctttcgttgaaggt |
13484242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13489854 - 13489967
Alignment:
| Q |
1 |
gttacagattctgataaccttatcccaaaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaactta |
100 |
Q |
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|||||||||||||||||| ||||||| || |||||||||| |||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13489854 |
gttacagattctgataactttatcccgaatgttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaagaaactta |
13489953 |
T |
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| Q |
101 |
cttttgttgaaggt |
114 |
Q |
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|||| ||||||||| |
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| T |
13489954 |
ctttcgttgaaggt |
13489967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 13508554 - 13508681
Alignment:
| Q |
1 |
gttacagattctgataaccttatcccaaaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaactta |
100 |
Q |
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||||| ||| |||| | ||||| ||||||||||||||||| |||||||||| |||| || |||||||| ||||| || |||||||||||||||||||| | |
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| T |
13508554 |
gttacggatgctgacacccttaccccaaaggttattgatgccatcaagagtattgatatcgttgaaggaaacggcggagccggaaccatcaagaaactca |
13508653 |
T |
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| Q |
101 |
cttttgttgaaggtcggtataaatatat |
128 |
Q |
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| T |
13508654 |
cttttgtcgaaggtcggtataaatatat |
13508681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 10797599 - 10797511
Alignment:
| Q |
22 |
atcccaaaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttga |
110 |
Q |
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| T |
10797599 |
atcccaaaagctgttgatgccatcaagagtgttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttga |
10797511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 50079189 - 50079101
Alignment:
| Q |
22 |
atcccaaaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttga |
110 |
Q |
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| T |
50079189 |
atcccaaaagctgttgatgccatcaagagtgttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttga |
50079101 |
T |
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