View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19543_low_4 (Length: 695)
Name: NF19543_low_4
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19543_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 21 - 683
Target Start/End: Complemental strand, 45393764 - 45393105
Alignment:
| Q |
21 |
ctgcaatcgagattttgctttatggaaatttaatttggattatctttcnnnnnnncacaccatgtgcttatttgttttttgttaatcctatcttttcctg |
120 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45393764 |
ctgcaatcgagattttgctttatggtaatt-aatttggattatctttctttttttcacaccatgtgcttatttgttttttgttaatcctatcttttcctg |
45393666 |
T |
|
| Q |
121 |
taaaattattaccgaggattaagatgtgtatgtttcaaattgattttacttgacgtctctaaatgttttgtggtattcatccannnnnnnaattatgtga |
220 |
Q |
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| T |
45393665 |
taaaattattaccgaggattaagatatgtatgtttcaaattgattttacttgacgtctctaaatgttttgtggtattcatccatttttttaattatgtga |
45393566 |
T |
|
| Q |
221 |
tctggtatttgattgtagtcaacattggcg-agtagaacaggttgttacaattgtaactccgtttataatccccaatatcttagatcagtttcacaatta |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45393565 |
tctggtatttgattgtagtcaacattggcggagtagaacaggttgttacaattgtaactccgtttataatccccaatatcttagatcagtttcacaatta |
45393466 |
T |
|
| Q |
320 |
gattggaataatagaagaacctctatgataacatgacacttattttttcattgatgttgattgtaaacttgttatcttgtggtaactactgcacaggaat |
419 |
Q |
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| T |
45393465 |
gattggaataatagaagaacctctatgataaca-----cttattttttcattgatgttgattgtaaacttgttatcttgtggtaactactgcacaggaat |
45393371 |
T |
|
| Q |
420 |
cttttatat--ttgttaatagatggtaatcgagtttcatagtctgcatttggatgggaaagattgatagttttcgccaccaactatgtgcagatgcttga |
517 |
Q |
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| T |
45393370 |
cttttatatatttgttaatagatggtaatcaggtttcatagtctgcatttggatgggaaagattgatagttttcaccaccaactatgtgcagatgcttga |
45393271 |
T |
|
| Q |
518 |
tcctgctgcacttatcagatggggactagcatattgaactttcctattgtagcgttaaagtgcttgctactaataattacttgaggcatgaaactcatac |
617 |
Q |
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| T |
45393270 |
tcctgctgcacttatcagatggggactagcatattgaactttcctattgtagcgttaaagtgcttgctactaataattacttgaggcatgaaactcatac |
45393171 |
T |
|
| Q |
618 |
attgtttgatcatgttgttgagagccttatgccgtaatcatatttattgaacatagaattcatatt |
683 |
Q |
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| T |
45393170 |
attgtttgatcatgttgttgagagccttatgccgtaatcatatttattgaacatagaattcatatt |
45393105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 52739913 - 52739838
Alignment:
| Q |
409 |
tgcacaggaatcttttatatttgtt-aatagatggtaatcgagtttcatagtctgcatttggatgggaaagattga |
483 |
Q |
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|||| ||||||| |||||||||||| || | ||||| || || ||||||||||||||||||| |||||||| |||| |
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| T |
52739913 |
tgcataggaatcatttatatttgtttaacatatggttattgaatttcatagtctgcatttgggtgggaaaggttga |
52739838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 52740194 - 52740103
Alignment:
| Q |
110 |
atcttttcctgtaaaattattaccgaggattaagatgtgtatgtttcaaattgattttacttgacgtctctaaatgttttgtggtattcatc |
201 |
Q |
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| T |
52740194 |
atcttttcctataaaattatttctgaggattaagatatgtatatttggaattgattctacacgacgtctccaaatgacatatggtattcatc |
52740103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 597
Target Start/End: Complemental strand, 52739789 - 52739739
Alignment:
| Q |
547 |
catattgaactttcctattgtagcgttaaagtgcttgctactaataattac |
597 |
Q |
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| T |
52739789 |
catattgaactttcctgttgtagttttaaagtgtttgctgctaataattac |
52739739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 593
Target Start/End: Complemental strand, 31667289 - 31667166
Alignment:
| Q |
466 |
ttggatgggaaagattgatagttttcgccaccaactatgtgcagatgcttgatcctgctgcacttatcagatggggactagcatattgaactttcctatt |
565 |
Q |
| |
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|||||||| |||| ||||| |||||||| | || ||||| ||| |||||||||||| |||||||||| ||| || ||||||||||||||||| | |
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| T |
31667289 |
ttggatggaaaaggttgattgttttcgcaaataataatgtgtagaagcttgatcctgc---acttatcagaaggg-acaggcatattgaactttcctggt |
31667194 |
T |
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| Q |
566 |
gtagcgttaaagtgcttgctactaataa |
593 |
Q |
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|||| ||||||||||||| ||||||| |
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| T |
31667193 |
gtagttttaaagtgcttgccgctaataa |
31667166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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