View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19543_low_7 (Length: 577)

Name: NF19543_low_7
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19543_low_7
NF19543_low_7
[»] chr1 (4 HSPs)
chr1 (5-136)||(48976712-48976839)
chr1 (446-560)||(48977562-48977676)
chr1 (191-305)||(48977314-48977429)
chr1 (352-452)||(48977438-48977539)
[»] chr4 (9 HSPs)
chr4 (303-421)||(35130602-35130720)
chr4 (288-423)||(31351649-31351784)
chr4 (303-421)||(13538246-13538364)
chr4 (303-414)||(49479462-49479573)
chr4 (303-419)||(42657503-42657619)
chr4 (297-404)||(9460178-9460284)
chr4 (357-420)||(55967780-55967843)
chr4 (313-419)||(38415496-38415602)
chr4 (313-421)||(35010384-35010492)
[»] chr2 (3 HSPs)
chr2 (303-389)||(37123587-37123673)
chr2 (288-426)||(9198907-9199044)
chr2 (288-425)||(31068869-31069006)
[»] chr3 (8 HSPs)
chr3 (290-424)||(6757233-6757367)
chr3 (325-425)||(55009517-55009617)
chr3 (303-389)||(38745284-38745370)
chr3 (303-389)||(41259944-41260030)
chr3 (345-425)||(32594559-32594639)
chr3 (297-367)||(51829542-51829612)
chr3 (315-424)||(6459197-6459306)
chr3 (303-419)||(54240605-54240721)
[»] chr8 (3 HSPs)
chr8 (303-367)||(13147735-13147799)
chr8 (288-414)||(28300093-28300219)
chr8 (288-421)||(12959706-12959839)
[»] chr6 (6 HSPs)
chr6 (301-420)||(24618950-24619068)
chr6 (38-118)||(230722-230797)
chr6 (313-421)||(6922635-6922743)
chr6 (313-424)||(12606646-12606757)
chr6 (303-411)||(7326322-7326430)
chr6 (356-384)||(12232167-12232195)
[»] chr7 (6 HSPs)
chr7 (303-421)||(9667222-9667340)
chr7 (303-404)||(25091177-25091277)
chr7 (313-374)||(45967362-45967423)
chr7 (326-408)||(13054607-13054689)
chr7 (336-374)||(36114325-36114363)
chr7 (303-419)||(27227255-27227371)
[»] scaffold0166 (1 HSPs)
scaffold0166 (290-412)||(35865-35987)
[»] chr5 (4 HSPs)
chr5 (290-412)||(24793482-24793604)
chr5 (288-426)||(30327649-30327787)
chr5 (288-389)||(15409184-15409284)
chr5 (303-424)||(20706501-20706622)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 48976712 - 48976839
Alignment:
Q  5 aaacagtgcgtttcagagaggactccagagagaggggatcgaacaaattgatttggtaaaccaatttatatatttagggtataagggatttagagagagg 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||||||||||||||    
T  48976712 aaacggtgcgtttcagagaggactccagagagaggggatcgaacaaattgatttggtaaaccaatt----tttttagggtataagggatttagagagagg 48976807  T
Q  105 gaaaccaatttttttggaggaatagagatatg 136  Q
    ||||||| ||||||||||||||||||||||||    
T  48976808 gaaaccattttttttggaggaatagagatatg 48976839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 446 - 560
Target Start/End: Original strand, 48977562 - 48977676
Alignment:
Q  446 cactaaaaggtgaccacactaatatgaaaatgtgcatcccggtggtatgcttccttccgtccaaataaaccaaccccaaatatgaacataatctttgtaa 545  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  48977562 cactaaaaggtgaccacaccaatatgaaaatgtgcatcctggtggtatgcttccttccgtccaaataaaccaaccccaaataggaacctaatctttgtaa 48977661  T
Q  546 tgacctcactaatgt 560  Q
    |||||| ||||||||    
T  48977662 tgaccttactaatgt 48977676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 191 - 305
Target Start/End: Original strand, 48977314 - 48977429
Alignment:
Q  191 gaacattacttgacccaccaaaactatatattcattgtcttacaaatattttatc-nnnnnnnnnnnaagcaaaattgtattaaagggataccttccatt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||| |||||||| | ||||||||||    
T  48977314 gaacattacttgacccaccaaaactatatattcattgtcttacaaatattttatctttttcttttttaagcaaaattgcattaaaggaacaccttccatt 48977413  T
Q  290 ttttattttggtgaag 305  Q
    ||||||||||||||||    
T  48977414 ttttattttggtgaag 48977429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 352 - 452
Target Start/End: Original strand, 48977438 - 48977539
Alignment:
Q  352 aatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactacatttacggaacaa-atacaacacaattaagatacacta 450  Q
    |||||||||||||||||||||||||| ||||||||||||| | ||| |||||||| | ||||| |||||| |||| ||||||||||||||||||||||||    
T  48977438 aatttggggttcgaaccccgaccaccgcacaaattatcttggatagataccaattaagctacagttacgggacaacatacaacacaattaagatacacta 48977537  T
Q  451 aa 452  Q
    ||    
T  48977538 aa 48977539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 303 - 421
Target Start/End: Original strand, 35130602 - 35130720
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||||  ||||||| ||| |||||||| || |||||||||||| |||||  ||||||||||||||| || |  ||||||||||||  ||||||||||    
T  35130602 aagtagtcatgtggctagattcacacacataatgtgtgaagaagtgggaaatccggggttcgaaccccggcccctgcacaaattatctctggtagctacc 35130701  T
Q  403 aattgaactacatttacgg 421  Q
    || ||||||||| ||||||    
T  35130702 aactgaactacacttacgg 35130720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 288 - 423
Target Start/End: Original strand, 31351649 - 31351784
Alignment:
Q  288 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 387  Q
    |||||| ||||| | ||||||||| ||||||| ||| ||||| ||||| |||| |||| || |||||  || ||||||||||||||| |  |||||||||    
T  31351649 tttttttttttgatcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaatta 31351748  T
Q  388 tcttcggtagctaccaattgaactacatttacggaa 423  Q
    |||  |||||||||||| ||| ||||| ||||||||    
T  31351749 tctctggtagctaccaactgagctacacttacggaa 31351784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 421
Target Start/End: Original strand, 13538246 - 13538364
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||||| ||||||| ||| ||||||||||| | || ||||||| |||||||||||||||||| ||  || | |||||||||||||  | ||||||||    
T  13538246 aagtagtctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctacc 13538345  T
Q  403 aattgaactacatttacgg 421  Q
    || ||| ||||| ||||||    
T  13538346 aactgagctacacttacgg 13538364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 49479573 - 49479462
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||||| |||| || ||| ||||||||||| |||| ||||||  |||||| ||| |||||||||| ||| | ||| ||||||| |  | ||||||||    
T  49479573 aagtagtctagtggttagattcacacacattatgtgtggagaagttggaaattcgggattcgaacccctacccctacataaattatttctgatagctacc 49479474  T
Q  403 aattgaactaca 414  Q
    || |||||||||    
T  49479473 aactgaactaca 49479462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 42657619 - 42657503
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||| | |||| || ||| ||||||||||| ||||||||||||   ||| |||||||||||| |||||| | | | |||||||||  | ||||||||    
T  42657619 aagtagtttagtggttaaattcacacacattatgtgtgaagaagtggagaatgtggggttcgaactccgacccctatataaattatctctgatagctacc 42657520  T
Q  403 aattgaactacatttac 419  Q
    || ||| ||||| ||||    
T  42657519 aactgagctacacttac 42657503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 404
Target Start/End: Complemental strand, 9460284 - 9460178
Alignment:
Q  297 ttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggta 396  Q
    ||||| ||||||| | ||||||| ||| ||||||||||| |||| |||| || | ||| |||| || ||||||||||| | |||||||||||||  | ||    
T  9460284 ttggtcaagtagtttagtggctatattcacacacattatgtgtggagaaatggggaatatgggatttgaaccccgacc-ctacacaaattatctctgata 9460186  T
Q  397 gctaccaa 404  Q
    ||||||||    
T  9460185 gctaccaa 9460178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 55967843 - 55967780
Alignment:
Q  357 ggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactacatttacg 420  Q
    ||||||||||||||| || | |||||||||||| | ||||| |||||||||| ||||| |||||    
T  55967843 ggggttcgaaccccggcccctacacaaattatccttggtagttaccaattgagctacacttacg 55967780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 419
Target Start/End: Original strand, 38415496 - 38415602
Alignment:
Q  313 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaacta 412  Q
    ||||||| ||| ||||||||||| | ||||||| ||   ||||||||||||||| || |||| |  ||||||||||| | | |||||||||| ||| |||    
T  38415496 gtggctagattcacacacattatgtatgaagaaatggagaatttggggttcgaatcctgacctctgcacaaattatccttgatagctaccaactgagcta 38415595  T
Q  413 catttac 419  Q
    || ||||    
T  38415596 cacttac 38415602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 421
Target Start/End: Original strand, 35010384 - 35010492
Alignment:
Q  313 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaacta 412  Q
    ||||||| ||| | ||||||||| |||| ||||||| |||||  || ||||||||||||||  |  ||||||||||||  | |||||||||| ||| |||    
T  35010384 gtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagcta 35010483  T
Q  413 catttacgg 421  Q
     | ||||||    
T  35010484 aacttacgg 35010492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 37123673 - 37123587
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 389  Q
    ||||||||| ||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||| ||||| | | ||||||||||||    
T  37123673 aagtagtctagtggctagattcacacacattatgtgtggagaagtgagaaatttggggttcgaatcccgaaccctacacaaattatc 37123587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 288 - 426
Target Start/End: Original strand, 9198907 - 9199044
Alignment:
Q  288 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaacccc-gaccaccacacaaatt 386  Q
    |||||| ||||||| |||||| || ||||||| |||  |||||||||| |||| ||||||| |||||| | |||||||||||| | || |  ||||||||    
T  9198907 tttttttttttggtcaagtagcctcgtggctaaatt--cacacattatgtgtggagaagtgggaaattcgaggttcgaaccccagcccgctgcacaaatt 9199004  T
Q  387 atcttcggtagctaccaattgaactacatttacggaacaa 426  Q
    ||||  |||||||||||| ||| ||||| |||||| ||||    
T  9199005 atctctggtagctaccaactgagctacacttacgggacaa 9199044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 425
Target Start/End: Original strand, 31068869 - 31069006
Alignment:
Q  288 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 387  Q
    |||||| |||| || || |||||| |||| || ||| ||||||||||  |||| ||||||| | |||  || |||| ||| |||||| | ||||||||||    
T  31068869 ttttttttttttgtcaaatagtctagtggttagattcacacacattaagtgtggagaagtggggaatccggagttcaaactccgacccctacacaaatta 31068968  T
Q  388 tcttcggtagctaccaattgaactacatttacggaaca 425  Q
    ||   | |||||||||| ||| ||||| ||||||||||    
T  31068969 tcaatgttagctaccaactgagctacacttacggaaca 31069006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 424
Target Start/End: Complemental strand, 6757367 - 6757233
Alignment:
Q  290 ttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 389  Q
    |||| ||||||| || ||| || ||||||| ||| ||||||||||| |||| | ||||||||||| | |||||| |||| | |||||  |||||||||||    
T  6757367 tttttttttggttaaatagcctagtggctagatttacacacattatgtgtggaaaagtgagaaatctagggttcaaacctcaaccactgcacaaattatc 6757268  T
Q  390 ttcggtagctaccaattgaactacatttacggaac 424  Q
     | | ||||||||| |||| |||||||||||||||    
T  6757267 cttgatagctaccagttgagctacatttacggaac 6757233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 55009617 - 55009517
Alignment:
Q  325 acacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactacatttacggaac 424  Q
    ||||||||||| | || |||||||||||||  |||||||||||||||  | | ||||||||||||     |||||||||||||| ||||| |||||||||    
T  55009617 acacacattatgtatggagaagtgagaaatccggggttcgaaccccggtctctacacaaattatccctaatagctaccaattgagctacacttacggaac 55009518  T
Q  425 a 425  Q
    |    
T  55009517 a 55009517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 38745284 - 38745370
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 389  Q
    ||||||||| ||||||| ||| ||||||||| | |||| ||||||| | |||| |||||||||| ||||||| |  |||||||||||    
T  38745284 aagtagtctagtggctagattcacacacattttgtgtggagaagtggggaattcggggttcgaatcccgacccctgcacaaattatc 38745370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 41259944 - 41260030
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 389  Q
    |||||| || ||||||| ||| ||||||||||| |||| ||||||| | |||| |||| |||||||||| || | ||||||||||||    
T  41259944 aagtagcctagtggctagattcacacacattatgtgtggagaagtggggaattcgggggtcgaaccccggcccctacacaaattatc 41260030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 32594639 - 32594559
Alignment:
Q  345 agtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactacatttacggaaca 425  Q
    |||| |||||| |||||||||||||||||||| |||||||||||      || ||||||| ||||||||| ||||||||||    
T  32594639 agtgggaaattcggggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaaca 32594559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 51829542 - 51829612
Alignment:
Q  297 ttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaac 367  Q
    ||||| ||||||| | ||||||| ||| ||| ||||||| |||| ||||||||| ||| ||||||||||||    
T  51829542 ttggtcaagtagtatagtggctagattcacatacattatgtgtggagaagtgaggaatctggggttcgaac 51829612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 424
Target Start/End: Original strand, 6459197 - 6459306
Alignment:
Q  315 ggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactaca 414  Q
    ||||| ||| ||||||||||| | || | |||||| |||| |||||||| |||||| ||||   ||||||||||| |  |||||||| | ||||  ||||    
T  6459197 ggctagatttacacacattatgtatggaaaagtgaaaaatctggggttcaaaccccaaccattgcacaaattatccttagtagctactagttgagttaca 6459296  T
Q  415 tttacggaac 424  Q
    ||||||||||    
T  6459297 tttacggaac 6459306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 54240721 - 54240605
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||||| |||| || ||| |||||||||||  ||| |||||||  ||||  | |||||||||||||||| |  |||| ||| || | ||||||| ||    
T  54240721 aagtagtctagtggttagattcacacacattatgcgtggagaagtggaaaatccgaggttcgaaccccgacccctgcacatattgtccttggtagctgcc 54240622  T
Q  403 aattgaactacatttac 419  Q
    || ||| ||||||||||    
T  54240621 aactgagctacatttac 54240605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 367
Target Start/End: Original strand, 13147735 - 13147799
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaac 367  Q
    ||||||||| ||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  13147735 aagtagtctagtggctagattcacacacattatgtgtgaagaagtgtgaaatttggggttcgaac 13147799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 288 - 414
Target Start/End: Complemental strand, 28300219 - 28300093
Alignment:
Q  288 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 387  Q
    |||||| ||||||| |||||| || ||||||| ||| ||||||||||| | || ||||||| | |||  ||||||||||||||| || |  |||||||||    
T  28300219 tttttttttttggtcaagtagccttgtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaaccccggcccctgcacaaatta 28300120  T
Q  388 tcttcggtagctaccaattgaactaca 414  Q
    || | |||||||||||| ||| |||||    
T  28300119 tcattggtagctaccaactgagctaca 28300093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 421
Target Start/End: Complemental strand, 12959839 - 12959706
Alignment:
Q  288 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 387  Q
    |||||| |||| || ||||||  | ||||||| ||| |||||||||||||| ||| ||||| | ||| ||||||||||||||| ||| |  ||||| |||    
T  12959839 ttttttgtttttgtcaagtagcttcgtggctagattcacacacattatatgcgaataagtggggaatctggggttcgaaccccaacccctgcacaagtta 12959740  T
Q  388 tcttcggtagctaccaattgaactacatttacgg 421  Q
    ||   | |||||||||| ||| ||||| ||||||    
T  12959739 tccctgatagctaccaactgagctacacttacgg 12959706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 24618950 - 24619068
Alignment:
Q  301 tgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagcta 400  Q
    ||||||||| | |||||||| || ||||||||||||| || ||||||  |||||| ||||||||||| ||| ||||  || ||||||||||  |||||||    
T  24618950 tgaagtagtatagtggctacgttcacacacattatatatggagaagtaggaaatt-ggggttcgaactccggccactgcataaattatctttagtagcta 24619048  T
Q  401 ccaattgaactacatttacg 420  Q
    |||| ||| |||||||||||    
T  24619049 ccaactgagctacatttacg 24619068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 230722 - 230797
Alignment:
Q  38 ggggatcgaacaaattgatttggtaaaccaatttatatatttagggtataagggatttagagagagggaaaccaatttttt 118  Q
    ||||||| ||| ||||||||||| ||| ||||||     ||||| ||||||||||||||||||||||||||||||||||||    
T  230722 ggggatcaaaccaattgatttggaaaatcaattt-----tttagagtataagggatttagagagagggaaaccaatttttt 230797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 421
Target Start/End: Original strand, 6922635 - 6922743
Alignment:
Q  313 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaacta 412  Q
    ||||||| ||| |||||||||||||||| ||||||| | ||| ||| ||| ||||||||||| |  ||||||||||    |||||||||||| |||||||    
T  6922635 gtggctagattcacacacattatatgtggagaagtggggaatctggagtttgaaccccgacccctgcacaaattattcatggtagctaccaactgaacta 6922734  T
Q  413 catttacgg 421  Q
    || ||||||    
T  6922735 cacttacgg 6922743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 424
Target Start/End: Complemental strand, 12606757 - 12606646
Alignment:
Q  313 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaacta 412  Q
    ||||||| ||| |||||||||||||||||||||||| | ||| ||||||||||||| |||   | ||||||||||||    ||||||||||| ||| |||    
T  12606757 gtggctagattcacacacattatatgtgaagaagtggggaatctggggttcgaacctcgattcctacacaaattatccctagtagctaccaactgagcta 12606658  T
Q  413 catttacggaac 424  Q
    || |||| ||||    
T  12606657 cacttacagaac 12606646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 411
Target Start/End: Original strand, 7326322 - 7326430
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||||| ||||||| ||| ||||||||||| |||| ||||||| | ||| | ||||||||| ||||||| |  | |||||||||   ||||||||||    
T  7326322 aagtagtctagtggctaaattcacacacattatgtgtggagaagtggggaatctagggttcgaaacccgacccctgctcaaattatccctggtagctacc 7326421  T
Q  403 aattgaact 411  Q
    || ||||||    
T  7326422 aactgaact 7326430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 12232195 - 12232167
Alignment:
Q  356 tggggttcgaaccccgaccaccacacaaa 384  Q
    |||||||||||||||||||||||||||||    
T  12232195 tggggttcgaaccccgaccaccacacaaa 12232167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 421
Target Start/End: Original strand, 9667222 - 9667340
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||||| ||||||  ||| ||||||||||| | || ||||||| |||||||||||||||||| ||  || | |||||||||||||  | ||||||||    
T  9667222 aagtagtctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctacc 9667321  T
Q  403 aattgaactacatttacgg 421  Q
    || ||| ||||| ||||||    
T  9667322 aactgagctacacttacgg 9667340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 404
Target Start/End: Complemental strand, 25091277 - 25091177
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||||| ||||||| ||| ||||||||||| ||||||||||||| |||| ||| ||| ||||| ||||| |  |||||||||||   ||||||||||    
T  25091277 aagtagtctagtggctagattcacacacattatgtgtgaagaagtga-aaatctggagtttgaacctcgacccctgcacaaattatccctggtagctacc 25091179  T
Q  403 aa 404  Q
    ||    
T  25091178 aa 25091177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 45967362 - 45967423
Alignment:
Q  313 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgacc 374  Q
    ||||||| ||| ||||||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  45967362 gtggctagattcacacacattatgtgtgaaaaagtgaggaattcggggttcgaaccccgacc 45967423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 408
Target Start/End: Complemental strand, 13054689 - 13054607
Alignment:
Q  326 cacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattga 408  Q
    |||||||||| |||| ||||||| ||||| |||||||||||||||| || |  |||| ||| ||   ||||||||||||||||    
T  13054689 cacacattatgtgtggagaagtgggaaatctggggttcgaaccccggcccctgcacatattttccctggtagctaccaattga 13054607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 374
Target Start/End: Original strand, 36114325 - 36114363
Alignment:
Q  336 atgtgaagaagtgagaaatttggggttcgaaccccgacc 374  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  36114325 atgtggagaagtgagatatttggggttcgaaccccgacc 36114363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 27227255 - 27227371
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    ||||||||| ||||||| ||| | ||||||||| |||| ||||||| | ||| |||| |||||| | | ||| | | |||||||||||  ||||| ||||    
T  27227255 aagtagtctagtggctagattcaaacacattatgtgtggagaagtggggaatctgggattcgaaacacaacccctatacaaattatctctggtaggtacc 27227354  T
Q  403 aattgaactacatttac 419  Q
    || ||| ||||| ||||    
T  27227355 aactgagctacacttac 27227371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 290 - 412
Target Start/End: Complemental strand, 35987 - 35865
Alignment:
Q  290 ttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 389  Q
    |||| |||| || ||||||||| ||||||| ||| ||| ||||||| |||  |||| || ||||| ||||||||| ||||||||| |  |||||||||||    
T  35987 ttttttttttgtcaagtagtctagtggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatc 35888  T
Q  390 ttcggtagctaccaattgaacta 412  Q
    |  | |||||||||| |||||||    
T  35887 tctgatagctaccaactgaacta 35865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 290 - 412
Target Start/End: Complemental strand, 24793604 - 24793482
Alignment:
Q  290 ttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 389  Q
    |||| |||| || ||||||||| ||||||| ||| ||| ||||||| |||  |||| || ||||| ||||||||| ||||||||| |  |||||||||||    
T  24793604 ttttttttttgtcaagtagtctagtggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatc 24793505  T
Q  390 ttcggtagctaccaattgaacta 412  Q
    |  | |||||||||| |||||||    
T  24793504 tctgatagctaccaactgaacta 24793482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 426
Target Start/End: Complemental strand, 30327787 - 30327649
Alignment:
Q  288 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 387  Q
    |||||| ||||| | ||||||| | ||||||| ||| ||||| ||||| |||| |||||||   |||| ||||||||||||||| || |  || ||||||    
T  30327787 tttttttttttgatcaagtagtttagtggctagattcacacatattatgtgtggagaagtggcgaattcggggttcgaaccccggcccctgcataaatta 30327688  T
Q  388 tcttcggtagctaccaattgaactacatttacggaacaa 426  Q
    |||  | |||||||||| ||| ||||| ||| |||||||    
T  30327687 tctctgatagctaccaactgagctacacttatggaacaa 30327649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 15409284 - 15409184
Alignment:
Q  288 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 387  Q
    |||||| |||| || ||||||||| ||||||| ||| ||||||||||| ||| |||||||| | ||| |||| ||| ||||||| || | ||||||||||    
T  15409284 ttttttttttttgtcaagtagtctagtggctaaattcacacacattatgtgtaaagaagtggggaatctgggattcaaaccccggcc-ctacacaaatta 15409186  T
Q  388 tc 389  Q
    ||    
T  15409185 tc 15409184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 424
Target Start/End: Complemental strand, 20706622 - 20706501
Alignment:
Q  303 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 402  Q
    |||||| ||||||| || ||| ||||||||||  |||| |||||||  |||| |  ||||| ||||  |||| |  ||||||||||| | ||||||||||    
T  20706622 aagtaggctggtggttagattcacacacattacgtgtggagaagtggaaaatctaaggttcaaaccttgacctctgcacaaattatcgttggtagctacc 20706523  T
Q  403 aattgaactacatttacggaac 424  Q
    || ||| |||||||||| ||||    
T  20706522 aactgagctacatttacagaac 20706501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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