View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19543_low_8 (Length: 557)
Name: NF19543_low_8
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19543_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 1350477 - 1350056
Alignment:
| Q |
17 |
tatttatgaaagagaaagtattaacaaaatattatttctttgatttaacaagggattcatcaaaatgatgatgaatttggactctttaaataaatgatta |
116 |
Q |
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| T |
1350477 |
tatttttgaaagagaatgtattaacaaaatattatttctttgatttaacaagggattcatcaaaatgatgatgaatttggact-tttaaacaaatgatta |
1350379 |
T |
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| Q |
117 |
agggtttggtctttaaatgtaaaaaatttagtatgagaagagaatccaccttatgtatctcataaatttttaacgttcagtcacaactaaataacaatgg |
216 |
Q |
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| T |
1350378 |
agagtttgatct----atgtaaaaaatttcggatgagaagagaatccaccttatgtacatcgtaaatttttaacgttcagtcacaactaaataacaatgg |
1350283 |
T |
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| Q |
217 |
aaacttagaatcgataatatgctaacnnnnnnngatgaaaagaaatcatatgtactctccaacggaaagattagttattgttaaacaacaatgaaaatta |
316 |
Q |
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| T |
1350282 |
aaacttagaatcgataatatgataacaaaaaaagatgaaaagaaattataagtactctccaacggagagattagttatcgttaaacaacgatgaaaatta |
1350183 |
T |
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| Q |
317 |
ttggtattattatttggagttaggacacgtgtcacattgaaaacgtaatccaacattacaagaaccacaaactacaacatagacaagaaacttcctcagt |
416 |
Q |
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| T |
1350182 |
ttcgtattattatttggagttaggacacgtgtcacattgaaaacgtaatccaacattacaagaaccacaaactacaacatagacaagaaacatcctcagt |
1350083 |
T |
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| Q |
417 |
ccactcaaaacaaatcaatggccattg |
443 |
Q |
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| T |
1350082 |
ccactcaaaacaaatcaatggccattg |
1350056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 1349992 - 1349959
Alignment:
| Q |
507 |
taacaaccaaacccaaatcccttcatcttcatca |
540 |
Q |
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| T |
1349992 |
taacaaccaaacccaaatcccttcatcttcatca |
1349959 |
T |
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