View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19543_low_9 (Length: 468)
Name: NF19543_low_9
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19543_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 99 - 456
Target Start/End: Original strand, 9500426 - 9500781
Alignment:
| Q |
99 |
aacatttatgtgtgtaacgtaatataaatataaattacttgtagtttataagtaaaagccggttattggtattgaagtcatcctggtatctggtatgctt |
198 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9500426 |
aacatttatgtgtataacgtaatataaatataaattacttgta--ttataagtaaaatccggttattggtattgaagtcatcctggtatctggtatgctt |
9500523 |
T |
|
| Q |
199 |
ttgggatagaaggctcctcatttctatttgggattgacaactatgattattgctctctgcttgggtggagattaaaccaatctccacccttcagctaaag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9500524 |
ttgggatagaaggctcctcatttctatttgggattgacaactatgattattgctctctgcttgggtggagattaaaccaatctccacccttcagctaaag |
9500623 |
T |
|
| Q |
299 |
tgaaacttgactaggttctagggtgtatggaagaccatagttgaattttctgttctccaacctatttgctacattgataaatactgtgtttggatgtatc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
9500624 |
tgaaacttgactaggttctagggtgtatggaagaccatagttgaattttctgttctccaacctatttgctacaatgataaatactatgtttggaagtatc |
9500723 |
T |
|
| Q |
399 |
actggcttgtcaattttattgcttgacaattaaaatatgattctacttcccacaggtt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9500724 |
actggcttgtcaattttattgcttgacaattaaaatatgattctacttcccataggtt |
9500781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9500328 - 9500397
Alignment:
| Q |
1 |
aatatattttatgatttgtgtatgtaacaattttaagccctatcctattgatttatcaactatgcctgaa |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9500328 |
aatatattttatgatttgtgtatgtaacaattttaagccctatcctattgatttatcaactatgcctgaa |
9500397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University