View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19544_low_1 (Length: 325)
Name: NF19544_low_1
Description: NF19544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19544_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 29 - 316
Target Start/End: Complemental strand, 12968824 - 12968535
Alignment:
| Q |
29 |
tgtgatgattttacgtaaccttcctatcatcaattatga--ttatttgatcaactttgaaccaatattttttattttaaagatctagacattgaagggaa |
126 |
Q |
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| T |
12968824 |
tgtgatgattttacgtaaccttcctatcatcaattatgagtttatttgatcaactttgaaccaatattttttattttgaagatctagacattgaagggaa |
12968725 |
T |
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| Q |
127 |
atgaatgatgtcgtatttcagcatgttaagtgtcatgaatgcatatcattttattgcaaagtgatactatagaatcacatgaattggacactgactattt |
226 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12968724 |
atgaatgatgtcttatttcagcatgttaagtgtcatgaatgcatatcattttattgcaaagtgatactatagaatcacatgaattggacactgactattt |
12968625 |
T |
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| Q |
227 |
caaccatatattctaagacaaagcttatgtagcttaacatgagattaaatatttgcaaactccatgttttccctctaattgaatgatgat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12968624 |
caaccatatattctaagacaaagcttatgtagcttaacatgagattaaatatttgcaaactccatgttttccctctaattgaatggtgat |
12968535 |
T |
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