View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19544_low_4 (Length: 297)
Name: NF19544_low_4
Description: NF19544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19544_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 11809199 - 11809458
Alignment:
| Q |
21 |
aacataagatgatggagtaagagaaggtggaacctgatctgaacaatcctagttttaaaattccaaatccagatcgaaaccgatctaaaatacaagttca |
120 |
Q |
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| T |
11809199 |
aacagaagatgatggagtaagagaaggtggaacctgctctgaacaatcctagttttaaaattccaaatgcagatcgaaaccgatctaaaat-caagttca |
11809297 |
T |
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| Q |
121 |
tatgagacaaccttgtttgacacggaagtct--tgttgaaattgtgttgtttagtttatgtttttgttgctgcagaatttgatttaataacaaatttttc |
218 |
Q |
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| T |
11809298 |
tatgagacaaccctgtttgacacggaagtctcttgttgaaattgtgttgtttagtttatgtttttgttgctgcagaatttgatttaataacaaatttttc |
11809397 |
T |
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| Q |
219 |
tattgtgttctgaacaccgttcggattatatgaaaatgcacatttctttagctgttgactt |
279 |
Q |
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| T |
11809398 |
tattgtgttctgaacaccgttcggattatatgaaaatgcacatttctttagctgttgactt |
11809458 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 17766708 - 17766664
Alignment:
| Q |
8 |
cgaagaatatggcaacataagatgatggagtaagagaaggtggaa |
52 |
Q |
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| T |
17766708 |
cgaagaatttgggaacacaagatgatggagtaggagaaggtggaa |
17766664 |
T |
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