View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19544_low_5 (Length: 237)
Name: NF19544_low_5
Description: NF19544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19544_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 28893883 - 28894087
Alignment:
| Q |
16 |
atgatgaaaaagtgtgagagaatagacaacacacctcttcaattgcaccaaatggaggtaaagcagcagatggagccaccgtgtccagcgccacacgtag |
115 |
Q |
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| T |
28893883 |
atgatgaaaaagtgtgagagaatagacaacacacctcttcaattgcaccaaatggaggtaaagcagcagatggagccaccgtgtccagcgccacgcgtag |
28893982 |
T |
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| Q |
116 |
gtaatccttcgaaatttttccatttttatctttaggcaaagtctctatagctgagttcaaaatctgcatcccatcgtggaggaattaatatatcaataag |
215 |
Q |
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| T |
28893983 |
gtaatccttcgaaatttttccatttttatctttaggcaaagtctctatagctgagttcaaaatctgcatcccatcgtggaggaattaatatatcaataag |
28894082 |
T |
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| Q |
216 |
ctagg |
220 |
Q |
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||||| |
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| T |
28894083 |
ctagg |
28894087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 1529822 - 1529895
Alignment:
| Q |
112 |
gtaggtaatccttcgaaatttttccatttttatctttaggcaaagtctctatagctgagttcaaaatctgcatc |
185 |
Q |
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| T |
1529822 |
gtaggtaatcctttgacattctttcattttgatctttaggcaaattctctacatctgtgttaaatatctgcatc |
1529895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 55098768 - 55098716
Alignment:
| Q |
43 |
aacacacctcttcaattgcaccaaatggaggtaaagcagcagatggagccacc |
95 |
Q |
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| T |
55098768 |
aacatacctcttcaattgcaccaactggaggtaaaccagcagatggagacacc |
55098716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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