View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_high_13 (Length: 360)
Name: NF19545_high_13
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_high_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 46642016 - 46642364
Alignment:
| Q |
10 |
agagagaagaaaattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatccacatgcacgaaatccatgaaggatacca |
109 |
Q |
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| T |
46642016 |
agagagaagataattaatggtgtaaattatgtcactgcagaggattggagagatttccaccgaaggaaatccacatgcacgaaatccatgaaggatacca |
46642115 |
T |
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| Q |
110 |
cctaaaaatgtgaatattttcatttgttaagattaattacctaccattcttttatggataacctatatgtcacaccatttaaatgtctaaccaaaccaat |
209 |
Q |
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| T |
46642116 |
cttaaaaatgtgaatattt--attcgttagtataaattacctactattcttttataggtaacctagatgtcacaccatttaaacgtctaaccaaaccaat |
46642213 |
T |
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| Q |
210 |
tacattattattttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctccaacatacacacatttatataaattcgcattcc |
309 |
Q |
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| T |
46642214 |
tacattattattttataagagtaacgtcaatttgcagcacaacaaacactaacttccaatatttctccaacatacacacatttatataaattcacattcc |
46642313 |
T |
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| Q |
310 |
cataacacaaaatcaaacccatccattatcagtaatggaatcctcttatag |
360 |
Q |
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| T |
46642314 |
cataacacaaaatcaaacccatccattatcggtaatggaatcctcttatag |
46642364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 187 - 360
Target Start/End: Original strand, 46639893 - 46640072
Alignment:
| Q |
187 |
tttaaatgtctaaccaaaccaattac---attattattttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctccaacata |
283 |
Q |
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| T |
46639893 |
tttaaatgtctaaccaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaacagaaacttccaaaatttctccaacata |
46639992 |
T |
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| Q |
284 |
cacacat---ttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatag |
360 |
Q |
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| T |
46639993 |
cacacaccccttatataaattcacattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatag |
46640072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 29966101 - 29966171
Alignment:
| Q |
12 |
agagaagaaaattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatcca |
82 |
Q |
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| T |
29966101 |
agagaagacaattaatggtgcagattgtatcactgcagaaaactggagagattttcacaggaggaaatcca |
29966171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 30008697 - 30008627
Alignment:
| Q |
12 |
agagaagaaaattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatcca |
82 |
Q |
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| T |
30008697 |
agagaagacaattaatggtgcagattgtatcactgcagaaaactggagagattttcacaggaggaaatcca |
30008627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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