View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_high_22 (Length: 238)
Name: NF19545_high_22
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 2855154 - 2855356
Alignment:
| Q |
18 |
agaacaattaaatagacaccatttatgttggaattaagaaaacaagaaatttcctttgatattgtcaagaaataaccaaccatacctttattaatataac |
117 |
Q |
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| T |
2855154 |
agaacaactaaatagacaccatttatgttggaattaagaaaacaagaaatttcctttgatattgtcaagaaataaccaaccatacctttattaatataac |
2855253 |
T |
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| Q |
118 |
catcattttctttgcaccgtccctaaaaaccatgaacttgtcatgcaccttcctatacaattcaaaattctcctattttttgtattatataacaagccct |
217 |
Q |
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| T |
2855254 |
catcattttctttgcaccgtccctaaaaa-aatgaacttgtcatgcaccttcctatacaattcaaaattctcctattttttgtattatataacaagccct |
2855352 |
T |
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| Q |
218 |
tcat |
221 |
Q |
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|||| |
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| T |
2855353 |
tcat |
2855356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 2851297 - 2851356
Alignment:
| Q |
151 |
gaacttgtcatgcaccttcctatacaattcaaaattctcctattttttgtattatataac |
210 |
Q |
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| T |
2851297 |
gaacttatcatgcaccttcctatacaattcaaaattgtgctttttttttaattatataac |
2851356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 2850787 - 2850828
Alignment:
| Q |
54 |
agaaaacaagaaatttcctttgatattgtcaagaaataacca |
95 |
Q |
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| T |
2850787 |
agaaaacaagaaattttctttgatagtgtcaagaaataacca |
2850828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 10477117 - 10477198
Alignment:
| Q |
36 |
ccatttatgttggaattaagaaaacaa-gaaatttcctttgatattgtcaagaaataaccaaccatacctttattaatataa |
116 |
Q |
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| T |
10477117 |
ccatttatgttggaattcataaaacaaagaactttcctttgatattgtcaagaaataacaaagcatatttttattattataa |
10477198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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