View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_high_5 (Length: 614)
Name: NF19545_high_5
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 41899068 - 41898559
Alignment:
| Q |
1 |
gatgatgagcttcaattttctaaagttgtcatgtatcatcaaccatattttagatattattttccgccataaaactaacttttgtattatttaaggagtg |
100 |
Q |
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| T |
41899068 |
gatgatgagcttcaattttctaaagttgtcatgtatcatcaaccatattttagatattattttccgccataaaactaacttttgtattatttaaggagtg |
41898969 |
T |
|
| Q |
101 |
ttcttgccataagttggttctaaattaatatattatactacaannnnnnn-aaagcttttatattatgactattgttacattaatttgtgttactgctgc |
199 |
Q |
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| T |
41898968 |
ttcttgccataagttggttctaaattaatatattatactacaattttttttaaagcttttatattattactattgttacattaatttgtgttactgctgc |
41898869 |
T |
|
| Q |
200 |
aatgaacctagtt-----aggtgaacattaattaatgaaagggtcgtggatcgtacttactgaataagttatgtatattactgtcacgttaacagatccc |
294 |
Q |
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| T |
41898868 |
aatgaacctagtttagttaggtgaacattaattaatgaaagggtcgtggatcgtacttactgaataagttatgtatattactgtcacgttaacagatccc |
41898769 |
T |
|
| Q |
295 |
agtttggttgctttatgaaaactgaatggatggatggaagaagagaagagagaaggaccatggcggcactgttataggatctgacacttctgataagtta |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41898768 |
agtttggttgctttatgaaaactgaatggatggatggaagaagagaagagagaaggaccatggcggcactgttataggatctgacacttctgataagtta |
41898669 |
T |
|
| Q |
395 |
gtaagcaaagcaaaaagaaaggaatgcatagggagaccactttcgctgtaaaggatttgacacccatcattccatctccac-tacttgtcccaacactac |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41898668 |
gtaagcaaagcaaaaagaaaggaatgcatagggagaccactttcgctgtaaaggatttgacacccatcattccatctccacttacttgtcccaacactac |
41898569 |
T |
|
| Q |
494 |
tatataacct |
503 |
Q |
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|||||||||| |
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| T |
41898568 |
tatataacct |
41898559 |
T |
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