View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_high_7 (Length: 560)
Name: NF19545_high_7
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 543
Target Start/End: Original strand, 2192865 - 2193397
Alignment:
| Q |
13 |
gaataaattgagaggattgtttccttatctatggtttctgcagaaaaggggaaacctcaaattggaaaacccaagaacaaaagcttgtgagcagaatttg |
112 |
Q |
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| T |
2192865 |
gaataaattgagaggattgtttccttatatatggtttctgcagaaaaggggaaacctcaaattggaaaacccaagaacaaaaccttgtgagcagaatttg |
2192964 |
T |
|
| Q |
113 |
tgcgcttcttgtttcaattgcagcgaggttacagagcacagccatcggaatcagtgagaaaacatcctccataaaaatagattaaggtattgatttttgt |
212 |
Q |
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| T |
2192965 |
tgcgcttcttgtttcaattgcagcgaggttacagagcacagccatcggaatcagcgagaaaacatcctccataaaaatagattaaggtattgatttttgt |
2193064 |
T |
|
| Q |
213 |
tcatgacttttacaactgaaaaataataacttcaatcaaatctaagcacctcaaagcctatgtcataactgtcaacgggtttctgcaaaataataacctc |
312 |
Q |
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| T |
2193065 |
tcatgacttttacaactgaaaaataataacttcaatcaaatctaagcacctcaaagcctatgtcataactgtcaacgggtttctgcaaaataataacctc |
2193164 |
T |
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| Q |
313 |
aatcataccaaaatacttcatctacaataataatattatcaatgttgtcttgaaaccatgactgcatcttcaatccctaatcagaaatcaaatctagaat |
412 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2193165 |
aatcataccaaaatacttcatctacaataataataatatcaatgttgtcttgaaaccatgactgcatattcaatccctaatcagaaatcaaatctagaat |
2193264 |
T |
|
| Q |
413 |
atacc--nnnnnnnnagccaagactgcaaattattttcatattaaatatccagcttttggttgttctacatctagattgaaggccatggataaaagcatc |
510 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2193265 |
ataccttttttttttagccaagactgcacattattttcatattaaatatccagcttttggttgtgctacatctagattgaaggccatggataaaagcatc |
2193364 |
T |
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| Q |
511 |
agaattcataacataaaaaatgaggcagaacct |
543 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2193365 |
agaattcataacataaaaaatgaggcagaacct |
2193397 |
T |
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