View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_high_8 (Length: 521)
Name: NF19545_high_8
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 14 - 504
Target Start/End: Complemental strand, 446392 - 445902
Alignment:
| Q |
14 |
aaatcaatggttaaggttttattaaattaatatactgattgggtatttgaactttccggtctaaaatcaatgatcgagatccattactgcatataactgc |
113 |
Q |
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| T |
446392 |
aaatcaatggttaaggttttattaaattaatatactgattgggtatttgaactttccggtctaaaatcaatgatcgagatccattactgcatataactgc |
446293 |
T |
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| Q |
114 |
tcctagataaggtactaaaaatgacccacatacctactaatgaagaaccaccaataggaattgaacacaaacacatgatgttgtttgatcctactagtta |
213 |
Q |
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| T |
446292 |
tcctagataaggtactaaaaatgacccacatacctactaatgaagaaccactaataggaattgaacacaaacacatgatgttgtttgatcctactagtta |
446193 |
T |
|
| Q |
214 |
agcttatcttcataggagacacatgatatattttgtctaaatataaatcattaaatggagatattttcgaaggaataggagattgcagtagttaccaatg |
313 |
Q |
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| T |
446192 |
agcttatcttcataggagacacatgatatattttgtctaaacataaatcattaaatggagatattttcgaaggaataggagattgcagtagttaccaatg |
446093 |
T |
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| Q |
314 |
gcatgcgaatgcatatctccctgactgcatttagtccagcagtgaagacctaaaaatatcactcaaactcatcaacctattaaagtcgaatgctcctatc |
413 |
Q |
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| T |
446092 |
gcatgcgaatgcatatctccctgactgcatttagtccagcagtgaagacctaaaaatatcactcaaactcatcaacctattaaagtcgaatgctcctatc |
445993 |
T |
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| Q |
414 |
atggaattaaattatgaaatctcattatgatatcgaatgttaatgcgacaggtgacaaacaaaatttacctctggttgtgagcatgcaagt |
504 |
Q |
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| T |
445992 |
atggaattaaattatgaaatctcattatgatatcgaatgttaatgcgacaggtgacaaacaaaatttacctctggttgtgagcatgcaagt |
445902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 238 - 417
Target Start/End: Original strand, 464165 - 464344
Alignment:
| Q |
238 |
gatatattttgtctaaatataaatcattaaatggagatattttcgaaggaataggagattgcagtagttaccaatggcatgcgaatgcatatctccctga |
337 |
Q |
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| T |
464165 |
gatatattttatcaaaacatgaatcattaaatgcagatatttcaaaatgaatagtagattgcagtagttaccattggcatgcggatgcatatctcccgga |
464264 |
T |
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| Q |
338 |
ctgcatttagtccagcagtgaagacctaaaaatatcactcaaactcatcaacctattaaagtcgaatgctcctatcatgg |
417 |
Q |
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| T |
464265 |
cagcgtttagtccaatagtgatggcctaaaaatatcaaccaaactcatcaacgtatcaaagttgaatgctactatcatgg |
464344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 39113276 - 39113364
Alignment:
| Q |
299 |
cagtagttaccaatggcatgcgaatgcatatctccctgactgcatttagtccagcagtgaagacctaaaaatatcactcaaactcatca |
387 |
Q |
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| T |
39113276 |
cagtacttaccagtggcatacgcaggcatatctccctgactgcatttattccaacagtgatagcctaaacatatcaaccaaactcatca |
39113364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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