View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_high_9 (Length: 475)
Name: NF19545_high_9
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 39 - 312
Target Start/End: Complemental strand, 33724557 - 33724291
Alignment:
| Q |
39 |
ttcaaactttgcctctcttactattttgcttggtttcatcttcacatgtacctcttcttcttgcatgcttcctttaacatgactagtatatatggaagaa |
138 |
Q |
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| T |
33724557 |
ttcaaactttgcctctcttactattttgcttggtttcatcttcacatgtacctcttcttcttgcatgcttcctttaacatgactagtatatatggaagaa |
33724458 |
T |
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| Q |
139 |
aattcgtacggtcatctttgacgagtttatgaatttgtacatttaccaaaagcttagtcaattttataataggtagctagcattttccatggattctcac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33724457 |
aattcgtacggtcatctttgacgagtttatgaatttgtacatttaccaaaagcttagtcaattttataataggtagctagcattttccatggattctcac |
33724358 |
T |
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| Q |
239 |
ataaagtttatccctcttgattagtattgactattgacacactacattgcttgcaatctcatacatttgtagat |
312 |
Q |
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| T |
33724357 |
ataaagtttattcctcttgattagtat-------tgacacactacattgcttgcaatctcatacatttgtagat |
33724291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 313 - 470
Target Start/End: Complemental strand, 33724219 - 33724063
Alignment:
| Q |
313 |
attaacatgacattatcattatattaacttgaacaagaagaaattaaagataattatgatgatcgatggttgcatacataaaatttaaatcgtgtgtgtg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33724219 |
attaacatgacattatcattatattaacttgaacaagaagaaattaaagataattatgatgatcgatggttgcatacataaaatttaaatcgtgtgtgtg |
33724120 |
T |
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| Q |
413 |
gttacactgaatttatgttagataagtccccttgatttttgtatattttcatctcact |
470 |
Q |
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| T |
33724119 |
gttacactgaatttatgttagataagtccccttgattttt-tatattttcatatcact |
33724063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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