View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_1 (Length: 767)
Name: NF19545_low_1
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 742
Target Start/End: Original strand, 2655504 - 2656211
Alignment:
| Q |
1 |
agaaggagaagcattcataaaattaagtttgcttcgttaaaacagaatgacattgatgcagaaataattttgctatgtaaaactgcatttggagatttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2655504 |
agaaggagaagcattcataaaattaagtttgcttcgttaagacagaatgacattgatgcagaaacaattttgctatgtaaaactgcatttggagatttca |
2655603 |
T |
|
| Q |
101 |
atttgtgattataaattaaaagagttgccttattggaatcagtgatcaatcaaaatgact-aattgtggtttagactaatcaatcaaatgaaccaaatta |
199 |
Q |
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| T |
2655604 |
atttgtgattataaattaaaagagttgccttattggaatcact----------atggcctgaattgtggtttagactaatcaatcaaatgaaccaaatta |
2655693 |
T |
|
| Q |
200 |
ttatcagccgcgaaggaaaataatacgaaaacatgtcaatgacttttattatggattcgtaatattagattataggaaatagcaattgnnnnnnn-caaa |
298 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
2655694 |
ttattagcagcgaaggaaaataatacgaaaacatgtcaatgacttttattatggattcgtaatattagattatagcaaatagcaattgaagaaaaacaaa |
2655793 |
T |
|
| Q |
299 |
gtcttgaaatcaaatgactaattgcataatagatgaacagaacataatctgccatctgatttttaacgacaaagaaaatgtagacaaagaggtaacatca |
398 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
2655794 |
gtcttgaaatcaaatgactaattgtataatagatgaacagaacataatctgccatctgattattaacgacaaagaaaatgtagataaacaggtaacatca |
2655893 |
T |
|
| Q |
399 |
ttnnnnnnncatcaaacagatgatcctcgtcaacgattattacgtcagctttaatctttgggttcaattttcacgcgcatgcaccatcttcgacggctgt |
498 |
Q |
| |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
2655894 |
ttaaaaaaacatcaaacatatgatcctcgtcaacgattattacgtcagctttaatctttgggttcaattttcacg----agcaccatctttgacggctgt |
2655989 |
T |
|
| Q |
499 |
gtgagagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccagatgatcttttcataaaagacttaccaacaggagtatggacca |
598 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2655990 |
gtgacagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccggatgatcttttcatagaagacttaccaacaggagtatgg---- |
2656085 |
T |
|
| Q |
599 |
tgtttgtgtcgctgcacgaatcaccacattctccaacctgctgctgcaaaatatggttttacaataatcaagataaagtaacaaaattctaacactataa |
698 |
Q |
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| T |
2656086 |
------------------aatcaccacattctacaacctgctgctgcaaaatatgattttacaataatcaagataaaataacaaaattctaacattataa |
2656167 |
T |
|
| Q |
699 |
tccaagttataagtgtattaaagatcgtaaggttataccatgtt |
742 |
Q |
| |
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|
| T |
2656168 |
tccaagttataagtgtattaaagattataaggttataccatgtt |
2656211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 479 - 638
Target Start/End: Original strand, 47764474 - 47764633
Alignment:
| Q |
479 |
gcaccatcttcgacggctgtgtgagagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccagatgatcttttcataaaagactt |
578 |
Q |
| |
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||||||||||||| |||||||| | |||||||||||||||||||||| ||||||| || |||||| |||| ||| ||||||||||||||| |||| || |
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| T |
47764474 |
gcaccatcttcgagggctgtgtcacagatgcttgtccaacctcgccatttccattcgttgaagaatctatattaccggatgatcttttcatagaagattt |
47764573 |
T |
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| Q |
579 |
accaacaggagtatggaccatgtttgtgtcgctgcacgaatcaccacattctccaacctg |
638 |
Q |
| |
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||||||||||| ||||| |||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
47764574 |
gccaacaggagtgtggacaatgtttgtgtcgctacacgaatcgccacattctacaacctg |
47764633 |
T |
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