View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19545_low_12 (Length: 432)
Name: NF19545_low_12
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 46640049 - 46640446
Alignment:
| Q |
16 |
atcagtaatggaatcctcttatagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccacta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46640049 |
atcagtaatggaatcctcttatagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccacta |
46640148 |
T |
|
| Q |
116 |
aacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46640149 |
aacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatg |
46640248 |
T |
|
| Q |
216 |
tatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtatagacataaaccatgcaaacatagcaggttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46640249 |
tatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtatagacataaaccatgcaaacatagcaggttc |
46640348 |
T |
|
| Q |
316 |
attaccagaagaacttggtcttttaatagacttagctcttttccacataaactcaaaccgtttctatggttcactccccaatagtttcaaccaccttc |
413 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46640349 |
attaccagaagaacttggtcttttaacagacatagctcttttccacataaactcaaaccgtttctatggttcactccccaatagtttcaaccaccttc |
46640446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 413
Target Start/End: Original strand, 46642345 - 46642738
Alignment:
| Q |
20 |
gtaatggaatcctcttatagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacc |
119 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
46642345 |
gtaatggaatcctcttatagtccaaaactcttaatttccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaatc |
46642444 |
T |
|
| Q |
120 |
caagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatgtatg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46642445 |
caagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaacaccactttaaactggtatggcccaaatgtatg |
46642544 |
T |
|
| Q |
220 |
caactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtatagacataaaccatgcaaacatagcaggttcatta |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46642545 |
caactacacaggtatcatttgtgcaccgtcactagatgatccttacatcaataccgttgctggtatagacataaaccatgcaaacatagcaggttcatta |
46642644 |
T |
|
| Q |
320 |
ccagaagaacttggtcttttaatagacttagctcttttccacataaactcaaaccgtttctatggttcactccccaatagtttcaaccaccttc |
413 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46642645 |
ccagaagaacttggtcttttaacagacatagctcttttccacataaactcaaaccgtttctatggttcactccccaatagtttcaaccaccttc |
46642738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University