View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_13 (Length: 413)
Name: NF19545_low_13
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 44 - 398
Target Start/End: Complemental strand, 39849679 - 39849325
Alignment:
| Q |
44 |
tcaccgtcactatccattaagtgcatccatatttcttttcttcctttctgttgtttatgcatgtcttaagaatcttgaaggaatgtgaagaagctaatcc |
143 |
Q |
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| T |
39849679 |
tcaccgtcactatccattaagtgcatccatatttcttttcttcctttctgttgtttatgcatgtcttaagaatcttgaaggaatgtgaagaagctaatcc |
39849580 |
T |
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| Q |
144 |
aaatgccgtagtaatgctcattttagccatcatacctacaacaaagatgaatgtgcatcacaatcagattcagcaggagtagagaggaaagtaaatattc |
243 |
Q |
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| T |
39849579 |
aaatgccgtagtaatgctcattttagccatcatacctacaacaaagatgaatgtgcatcacaatcagattcagcaggagtagagaggaaagtaaatattc |
39849480 |
T |
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| Q |
244 |
gatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatataacatgtatgtattgatg |
343 |
Q |
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| T |
39849479 |
aatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatataacatgtaagtattgatg |
39849380 |
T |
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| Q |
344 |
ttcagcctacgctgtttgatacaaaatacacaagtgaatatacttatatatgcat |
398 |
Q |
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| T |
39849379 |
ttcagcctacgctgtttgatacaaaatacacaagtgaatatacttatatatgcat |
39849325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 110 - 373
Target Start/End: Original strand, 33973168 - 33973436
Alignment:
| Q |
110 |
taagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaaca--aagatgaatgtgcatcacaat |
207 |
Q |
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| T |
33973168 |
taagaatcttgaatgaatgtgaagaagctgatccaaatgccatagca-tgctcagtttatccatcattcctacaggtggagaataaatgtgcattacaat |
33973266 |
T |
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| Q |
208 |
cagattcagcaggagtagagaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaag--actagtaact |
305 |
Q |
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| T |
33973267 |
tagggacatcaggagtagagaggaaagtaaatacttgatgtattgaatttgatgaacacataaaccaatcgtaagtagtctactgaagacacacgtaact |
33973366 |
T |
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| Q |
306 |
caatcacatatg--atacatataacatgtatgtattgatgttcagcctacgctgtttgatacaaaataca |
373 |
Q |
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| T |
33973367 |
ctacaacagatggaacatatataacatgtaagtattgatgcgcagcccacgctgtttgatacataataca |
33973436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 32202033 - 32201953
Alignment:
| Q |
111 |
aagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaacaaagat |
191 |
Q |
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| T |
32202033 |
aagaatcttgaatgaatgtgaagaagctaatccaaataccatagcgatgcttattttagccatcattcctacaacaaagat |
32201953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 3981494 - 3981351
Alignment:
| Q |
230 |
gaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatataaca |
329 |
Q |
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| T |
3981494 |
gaaagtaaatattagatgcattgcatatggttaacaaataaaccaaccataagtagtctactgaagataagcaactccacataatataaaacacataaca |
3981395 |
T |
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| Q |
330 |
tgtatgtattgatgttcagcctacgctgtttgatacaaaataca |
373 |
Q |
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| T |
3981394 |
tgtaagtatttatcttcatcctacgttgtttgatacataataca |
3981351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 3981606 - 3981521
Alignment:
| Q |
92 |
tgttgtttatgcatgtcttaagaatcttgaaggaat-gtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcat |
176 |
Q |
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| T |
3981606 |
tgttgtttatgcatttctcaagattctggaatgaattgtgaagaagctgctccaaatgccatgacaatgctcaatttagccatcat |
3981521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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