View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_17 (Length: 349)
Name: NF19545_low_17
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 55456291 - 55455978
Alignment:
| Q |
16 |
caaaaagactaagagctacaccaggagtgaagttagtagagaaagatagaggagtgaaactgatgacaacatacactcctgactttcttaacttaccaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
55456291 |
caaaaagactaagagctacaccaggagtgaagttagtagagaaagatagaggagtgaaactgatgacaacatacactcctgattttcttaacttgccaaa |
55456192 |
T |
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| Q |
116 |
aggattatgggcacaagaaggaggtgacaaaaatgcaggtgatggaattgttattggtattgttgatagtggcattaatccaattcatccaagctttgct |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55456191 |
aggattatgggcacaagtaggaggtgacaaaaatgcaggtgatggaattgttattggtattgttgatagtggcattaatccaattcatccaagctttgct |
55456092 |
T |
|
| Q |
216 |
taccaacctttcacttcaaatatctctcacttttctggtgcttgtgagactggtccacatttcccacctggttcttgcaatggaaagattatttcagcta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55456091 |
taccaacctttcacttcaaatatctctcacttttctggtgcttgtgagactggtccacatttcccacctggttcttgcaatggaaagattatttcagcta |
55455992 |
T |
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| Q |
316 |
aatatttctctgct |
329 |
Q |
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|||||||||||||| |
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| T |
55455991 |
aatatttctctgct |
55455978 |
T |
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