View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_19 (Length: 323)
Name: NF19545_low_19
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 37915444 - 37915135
Alignment:
| Q |
1 |
gaaaatcctgaaagctgtgaaatagtcagaccaaaaatctgattttagaaatggggaattaaaactaaaactataatttagacaatagaggtggaccaaa |
100 |
Q |
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| T |
37915444 |
gaaaatcctgaaagctgtgaaatagtcagaccaaaaatctgattttagaaatggggaattaaaactaaaactataatttagacaatagaggtggaccaaa |
37915345 |
T |
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| Q |
101 |
tatgcattnnnnnnnnnnnnnnnnnnnnnnnctcctatttcaaattttcactagcagttgtatttgaatcatgtgcataccaccatacttggcctcttag |
200 |
Q |
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| T |
37915344 |
tatgcatttaaataaaaatataaaaataaaactcctatttcaaattttcactagcagttgtatttgaatcatgtgcataccaccatacttggcctcttag |
37915245 |
T |
|
| Q |
201 |
gaaaacaacattatgcatagttcaattggtcaatgaaccttgagtttgcagaaaaacttcacctaattaaattttgtccatttatttactttgaatcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915244 |
gaaaacaacattatgcatagttcaattggtcaatgaaccttgagtttgcagaaaaacttcacctaattaaattttgtccatttatttactttgaatcata |
37915145 |
T |
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| Q |
301 |
cgtacatatt |
310 |
Q |
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| T |
37915144 |
cgtacatatt |
37915135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 35538452 - 35538403
Alignment:
| Q |
239 |
cttgagtttgcagaaaaacttcacctaattaaattttgtccatttattta |
288 |
Q |
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| T |
35538452 |
cttgaatttgcagaaaaacttcacctactcaaaccttgtccatttattta |
35538403 |
T |
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