View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_2 (Length: 692)
Name: NF19545_low_2
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 23 - 680
Target Start/End: Complemental strand, 12885806 - 12885146
Alignment:
| Q |
23 |
ctattccactgtcttagagcttgccactaacaacaatgtacttattctctgttgtgaactaaacgaccaaacaaattacattgtcaacaaagaagtgatg |
122 |
Q |
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|||||||||||||||||||||||| || ||| ||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||| |
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| T |
12885806 |
ctattccactgtcttagagcttgcaacagacaccaatgtactgattctatgttgtgatttaaacgaccaaacaaggcacattgtcaacaaagaagtcatg |
12885707 |
T |
|
| Q |
123 |
ttggcactaggaaaaggtggaatcatagtgaatgttggaagaggagctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattggag |
222 |
Q |
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|||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12885706 |
ttggcattgggaaaaggaggaatcatagtgaatgttggaagaggtgctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattggag |
12885607 |
T |
|
| Q |
223 |
gtgctggtttggatgtgtttgagaatgaacctcatgttcctaaagaattctattcattgaataatgttgtcctttcacctcatgcagctgttgtaacttc |
322 |
Q |
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| T |
12885606 |
gtgctggtttggatgtgtttgagaatgaacctcatgttcctaaagacttcttttcattggataatgttgtcctttcacctcatgcagctgttgtaacttc |
12885507 |
T |
|
| Q |
323 |
tgagtctttgatgggtatctgccaacttgtggaacaaaatttgacagcattcttttcaaataaacctctgattgctccagttatatagttgattg----- |
417 |
Q |
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| T |
12885506 |
tgagtctttgatgggtatccgccaaattgtggaacaaaatttgacagcattcttttcaaataaagctccgattactccggttatatagttgattggatgc |
12885407 |
T |
|
| Q |
418 |
--aatgtgtatttggaaatctcaaattcagcgttaacattcatcatgtgtttccttcatcccaccgcgttaccaagtagactggctatgaattgtttttc |
515 |
Q |
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| T |
12885406 |
gttatgtgtatttggaaatctcaaattcagtgttatcattcgccgtgtgtttccttcatcccaccgcgttaccaagtaga----ctatgaaatgtttttc |
12885311 |
T |
|
| Q |
516 |
acgttttgtttattcctttgttgaatcctttcgaacatgtttgttcttatggtgtttttaggtcaagtttgtaatgatcgatatgcgctactagtttgag |
615 |
Q |
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| T |
12885310 |
acattttttttgttcctatgttgcatccttttgaacatgtttgttcttatggtgtttttaggtcaagtttgtaatgatcgatatgcgctactagtttgag |
12885211 |
T |
|
| Q |
616 |
agatcagctattaagaatgttaagctcagagtttattaagtatcaaattttagttatttttatat |
680 |
Q |
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| T |
12885210 |
agatcggctatgaagaatgttaagttcagagtttattaagtatcaaattttagttatttttatat |
12885146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 36 - 412
Target Start/End: Complemental strand, 12897431 - 12897055
Alignment:
| Q |
36 |
ttagagcttgccactaacaacaatgtacttattctctgttgtgaactaaacgaccaaacaaattacattgtcaacaaagaagtgatgttggcactaggaa |
135 |
Q |
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| T |
12897431 |
ttagagcttgcaacaaacaccaatgtactgattctatgttgtgatttaaacgaccaaacaaggcacattgtcaacaaagaagtaatgttggcactaggaa |
12897332 |
T |
|
| Q |
136 |
aaggtggaatcatagtgaatgttggaagaggagctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattggaggtgctggtttgga |
235 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
12897331 |
aaggcggaatcatagtgaatgttggaagaggtgctctcattgatgaaaaggaattgttgaagtgtttgattgaagaagagattggaggtgctggtttgga |
12897232 |
T |
|
| Q |
236 |
tgtgtttgagaatgaacctcatgttcctaaagaattctattcattgaataatgttgtcctttcacctcatgcagctgttgtaacttctgagtctttgatg |
335 |
Q |
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| T |
12897231 |
tgtgtttgaaaatgaacctcatgttcctaaagacttctattcattggataatgttgtcctttcacctcattcagctgtcttaactttagagtcacatatg |
12897132 |
T |
|
| Q |
336 |
ggtatctgccaacttgtggaacaaaatttgacagcattcttttcaaataaacctctgattgctccagttatatagtt |
412 |
Q |
| |
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| T |
12897131 |
ggtatctgccaacttgtggaacaaaatttgatagcattcttttcaaataagcctctgattactccagttatatagtt |
12897055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 12881403 - 12881215
Alignment:
| Q |
72 |
tgttgtgaactaaacgaccaaacaaattacattgtcaacaaagaagtgatgttggcactaggaaaaggtggaatcatagtgaatgttggaagaggagctc |
171 |
Q |
| |
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||||||| ||||||| |||||||| |||| || |||||||| || | |||||| ||||||||| || | || || |||||||||||||| | || |
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| T |
12881403 |
tgttgtgcactaaacaaccaaacacgacacatagtaaacaaagatgtccttttggcattaggaaaagaagggtttattgtaaatgttggaagaggtggtc |
12881304 |
T |
|
| Q |
172 |
tcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattggaggtgctggtttggatgtgtttgagaatgaacctcatgtt |
260 |
Q |
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| T |
12881303 |
ttattgatgagaaacaattgatcaagtgtttgatggaaggagaaattgctggtgctggtttggatgtgtttgagaatgaacctcatgtt |
12881215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 28453783 - 28453896
Alignment:
| Q |
147 |
atagtgaatgttggaagaggagctctcattgatgaaaaggaattgttgaagtgtttgattgaagatgaaattggaggtgctggtttggatgtgtttgaga |
246 |
Q |
| |
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||||| |||||||||||| | |||| |||||||| ||| ||| |||| |||||||| |||| | ||||| ||||||||||||||||||||||||| |
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| T |
28453783 |
atagtcaatgttggaagatggtctctaattgatga---ggagttggtgaattgtttgatagaaggacatattggtggtgctggtttggatgtgtttgaga |
28453879 |
T |
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| Q |
247 |
atgaacctcatgttcct |
263 |
Q |
| |
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| T |
28453880 |
atgagcctaatgttcct |
28453896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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