View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_20 (Length: 294)
Name: NF19545_low_20
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 39934900 - 39934639
Alignment:
| Q |
18 |
ttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggaaaatcacttatgccgctcca |
117 |
Q |
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| T |
39934900 |
ttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggcaaatcacttatgccgctcca |
39934801 |
T |
|
| Q |
118 |
gcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtgcatataatgttt |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934800 |
gcgaataggagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtgcatataatgttt |
39934701 |
T |
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| Q |
218 |
ccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagcttttcat |
279 |
Q |
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| T |
39934700 |
ccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagcttttcat |
39934639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 39695215 - 39695474
Alignment:
| Q |
18 |
ttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattacc-ggaaaatcacttatgccgctcc |
116 |
Q |
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| T |
39695215 |
ttatagtcttgatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaatgcct-atgccgctcc |
39695313 |
T |
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| Q |
117 |
agcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtgcatataatgtt |
216 |
Q |
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| T |
39695314 |
aacgaataggagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagtacatgtgc--ataatgtt |
39695411 |
T |
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| Q |
217 |
tccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagcttttcat |
279 |
Q |
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|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39695412 |
tccatgtctgtgttatggttgtttccacagttagtgttggttggtattggagaagcttttcat |
39695474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 39704127 - 39704383
Alignment:
| Q |
18 |
ttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggaaaatcacttatgccgctcca |
117 |
Q |
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|||| ||| |||||||| || ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||| | | |||||| || || |
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| T |
39704127 |
ttatagtcataatatcaacatccattttcctcacctttcttgacagagtgctattgccatgttggcataagattactggaaaaacgcctatgccacttca |
39704226 |
T |
|
| Q |
118 |
gcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtgcatataatgttt |
217 |
Q |
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| T |
39704227 |
acgaataggagtaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagaggctcaaattggtacatgtgc-----atgtgg |
39704321 |
T |
|
| Q |
218 |
ccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagcttttcat |
279 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704322 |
aaatgtctgtgttatggttgtttccacaattagtgttggttggtattggagaagcttttcat |
39704383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 39929248 - 39928992
Alignment:
| Q |
18 |
ttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggaaaatcacttatgccgctcca |
117 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||| | || || |||||| |
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| T |
39929248 |
ttatagtcttaatatcagcacccattttcctcacttttcttgacagggtgctattgccaagttggcataaggttaccagaaaatctcctaagctgctcca |
39929149 |
T |
|
| Q |
118 |
gcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtgcatataatgttt |
217 |
Q |
| |
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| |||| ||| |||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| | |||||| |
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| T |
39929148 |
tcaaataggagtaggacatgtgttcaatgttcttggcatggtggtctctgctcttgttgaatcgaagagactcaaattagcgcatg-----aacatgttt |
39929054 |
T |
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| Q |
218 |
ccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagcttttcat |
279 |
Q |
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| T |
39929053 |
caatgtctgtattatggttgtttccacaattagtgttggttggtatcggagaagcgtttcat |
39928992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 38061927 - 38061669
Alignment:
| Q |
17 |
attattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggaaaatca-cttatgccgctc |
115 |
Q |
| |
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||||| || ||||||||| || | ||||| ||||| ||||||||||| ||| | |||||| ||||| ||| ||| |||| |||| | | |||||||||| |
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| T |
38061927 |
attatagtgttaatatcaacatctattttcctcacctttcttgacagagtgttattgccaggttggaatacgataaccgaaaaaaaagcctatgccgctc |
38061828 |
T |
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| Q |
116 |
cagcgaatatgagcaggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtgcatataatgt |
215 |
Q |
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| T |
38061827 |
caacgaataggagtaggctatgtgttgaccattctgggtatggttgtctccgctcttgttgagacaaaaagactcaaattagcacatgt-----tcatgt |
38061733 |
T |
|
| Q |
216 |
ttccatgtccgtgttatggttttttccacaattagtgttggttggtattggagaagcttttcat |
279 |
Q |
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||||| |||||||| || |||||||||||| || |||| |||||||||||||||||||| |
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| T |
38061732 |
ggaaatgtctgtgttatgtttgtttccacaattaatgctggtgagtattggagaagcttttcat |
38061669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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