View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19545_low_21 (Length: 281)
Name: NF19545_low_21
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 7431282 - 7431534
Alignment:
| Q |
17 |
acgaacaacccagcgggttttccggcaagcttctgcccctgccacaaactcccagtagaatcaaaaaacgccttcatctgcgccgccatagacccatacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7431282 |
acgaacaacccagcgggttttccggcaagcttctgcccctgccacaaactcccagtagaatcaaaaaacgccttcatctgcgccgccatagacccatacc |
7431381 |
T |
|
| Q |
117 |
tagtcggaaacccaaacaaaacaccatccgcctctgtcagcatctccggcgatatcaccggaatcgtttcatctttcaccggcgctttcatcatgttcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7431382 |
tagtcggaaacccaaacaaaacaccatccgcctctatcagcatctccggcgatatcaccggaatcgtttcatctttcaccggcgctttcatcatgttcaa |
7431481 |
T |
|
| Q |
217 |
aacctcattcgacaatgtctcaggtactctgtataaaacccctaccacacctt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7431482 |
aacctcattcgacaatgtctcaggtactctgtataaaacccctaccacacctt |
7431534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 26030987 - 26031035
Alignment:
| Q |
87 |
ccttcatctgcgccgccatagacccatacctagtcggaaacccaaacaa |
135 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
26030987 |
ccttcatctgcgccgccatactaccaaacctcgtcggaaacccaaacaa |
26031035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University