View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19545_low_27 (Length: 235)
Name: NF19545_low_27
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1742481 - 1742697
Alignment:
| Q |
1 |
actgcaccactttgagattattgagagtgattcatcttcaattcttgctcctgacaagttcaacaccttcaattgggaaacttcaaagtttatttcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1742481 |
actgcaccactttgagattattgagagtgattcatcttcaattcttgctcctgacaagttcaacaccttcaattgggaaacttcaaagtttatttcaaat |
1742580 |
T |
|
| Q |
101 |
ttttcaattcctgtatatgcaatgtttaagtgccttatcacatagcatcttttcataacctcagcaacacattctccagtgataccttcacatgcattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1742581 |
ttttcaattcctgtatatgcaatgtttaagtgccttatcacatagcatcttttcataacctcggcaacacattctccagtgataccttcacatgcattta |
1742680 |
T |
|
| Q |
201 |
agtcaagaagttgtaaa |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1742681 |
agtcaagaagttgtaaa |
1742697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 2007852 - 2007638
Alignment:
| Q |
3 |
tgcaccactttgagattattgagagtgattcatcttcaattctt-gctcctgacaagttcaacaccttcaattgggaaacttcaaagtttatttcaaatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2007852 |
tgcaccactttgagattattgagagtgattcatcttcaattttttgatcctgacaagtttaacaccttcaattgggaaacttcaaagtttatctcaaatt |
2007753 |
T |
|
| Q |
102 |
tttcaattcctgtatatgcaatgtttaagtgccttatcacatagcatcttttcataacctcagcaacacattctccagtgataccttcacatgcatttaa |
201 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||||| |||||||||| ||| |||||||| || ||||||||||| |||||| ||||| ||||| || |
|
|
| T |
2007752 |
tttcaattcctgtatatgcaaggtttaaatgtcttatctcatagcatctcttcttaacctcaataatacattctccagagataccctcacaagcattaaa |
2007653 |
T |
|
| Q |
202 |
gtcaagaagttgtaa |
216 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
2007652 |
gtcaagcagttgtaa |
2007638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 27922563 - 27922607
Alignment:
| Q |
52 |
tgacaagttcaacaccttcaattgggaaacttcaaagtttatttc |
96 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||| ||||| |
|
|
| T |
27922563 |
tgacaagttcaacacctccaatttgggaacttcaaagttcatttc |
27922607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University