View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_28 (Length: 228)
Name: NF19545_low_28
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 31443722 - 31443930
Alignment:
| Q |
1 |
gaaggtagagtgactgaatgaagcattttggttgttgagttcttagtgtgagccagaggaagaggatggtgaggcctgtgctggtgatgaagcttgtgca |
100 |
Q |
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| T |
31443722 |
gaaggtagagtgattgaatgaagcattttggttgttgagttcttagtgtgagccagaggaagaggatggtgaggcctgtgctggtgatgaagcttgtgca |
31443821 |
T |
|
| Q |
101 |
gcaggtgcagcagttgatgcggggttcccgcgcgggccgcgccatctatggtggttggttagttagtggtgatagaggatgaatgatgaagaagaataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31443822 |
gcaggtgcagcagttgatgcggggttcccgcgcgggccgcgccatctacggtggttggtttgttagtggtgatagaggatgaatgatgaagaagaataat |
31443921 |
T |
|
| Q |
201 |
aacaagaag |
209 |
Q |
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||||||||| |
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| T |
31443922 |
aacaagaag |
31443930 |
T |
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