View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_29 (Length: 226)
Name: NF19545_low_29
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31443543 - 31443324
Alignment:
| Q |
1 |
cgacggtttctaccaaggacatggtaaaaccgctgagaaatggagttctgccgaggcgcgtggtggtggtggtggagtgaaccgtacagtgcaaggaagt |
100 |
Q |
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| T |
31443543 |
cgacggtttctaccaaggacatggtaaaaccgctgagaaatggagttctgccgaggcgcgtggtggtggtggtggagtgaaccgtacagtgcaaggaagt |
31443444 |
T |
|
| Q |
101 |
gttttcttaagggtggagtttgtcacacgcgttaagtataagattctgtttgtatatactaaacgacaccgtttgtctggaggggcaaatgtggaagtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31443443 |
gttttcttaagggtggagtttgtcacacgcgttaagtataagattctgtttgtatatactaaacgacaccgtttgtctggaggggcaaatgtggaagtta |
31443344 |
T |
|
| Q |
201 |
atgttagttcagggcagaag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
31443343 |
atgttagttcagggcagaag |
31443324 |
T |
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