View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_32 (Length: 220)
Name: NF19545_low_32
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 40620492 - 40620396
Alignment:
| Q |
102 |
ttagttactggtaggaccaccaagttgagtgacagcatcaacaaaacgttggtgaaggtcagtagtccaacgaagacgaggttttggatcagaagtg |
198 |
Q |
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| T |
40620492 |
ttagttactggtaggaccaccaagttgagtgacagcatcaacaaagcgttggtgaaggtcagtagtccaacgaagacgaggttttggatcagaagtg |
40620396 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 15568625 - 15568553
Alignment:
| Q |
121 |
ccaagttgagtgacagcatcaacaaaacgttggtgaaggtcagtagtccaacgaagacgaggttttggatcag |
193 |
Q |
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| T |
15568625 |
ccaagctgagtaacagcatcaacaaaacgttcatggagttcaacagtccaacgaagacgaggttttgggtcag |
15568553 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 10196689 - 10196611
Alignment:
| Q |
115 |
ggaccaccaagttgagtgacagcatcaacaaaacgttggtgaaggtcagtagtccaacgaagacgaggttttggatcag |
193 |
Q |
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| T |
10196689 |
ggacctccaagctgagtaacagcatcaacaaaacgttcatgcaaatcttgagtccaacgaagacgaggttttggatcag |
10196611 |
T |
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