View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_6 (Length: 562)
Name: NF19545_low_6
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 16 - 550
Target Start/End: Complemental strand, 14870940 - 14870406
Alignment:
| Q |
16 |
atggactagccgaacataagaattgtcagcaccgaaagaatttgaacactctaagaatctagagaggaaaacactctaagtggtaagtctacaccaataa |
115 |
Q |
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| T |
14870940 |
atggactagccgaacataagaattgtcagcaccgaaagaatttgaacactctaagaatctagagaggaaaacactctaagttgtaagtctacaccaataa |
14870841 |
T |
|
| Q |
116 |
accaacccctagggtttcagttcaccaagttcatcaaaatttagttgaaattttgagaatgattagtttgatctaacataaacaatgtatagagtacaaa |
215 |
Q |
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| T |
14870840 |
accaacccctagggtttcagttcaccaagttcatcaaaatttagttgaaattttgagaatgattagtttgatctaacataaacaatgattagagtacaaa |
14870741 |
T |
|
| Q |
216 |
aatatatatggtacaaatacaactaaactattataatttcacaagttgtacaacactcttatgacgaacacacttctaagcattctgatgaacatagtga |
315 |
Q |
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| T |
14870740 |
aatatatatggtacaaatacaactaaactattataatttcacaagttgtacaacactcttatgacgaacacacttctaagcattctgatgaacatagtga |
14870641 |
T |
|
| Q |
316 |
tagaaacttttaccaaatgtaaattatttatgaatgaataacaacgtaataatattgatctaacctctagacaaaggcattattctcaatcagaatttca |
415 |
Q |
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| T |
14870640 |
tagaaacttttaccaaatgtaaattatttatgaatgaataacaacgtaataatattgatctaacctctagacaaaggcattattctcaatcagaatttca |
14870541 |
T |
|
| Q |
416 |
tacaaatacaatgtttgcatagacattgttacaaaggaaataaacacacttgttgaaaatgaccacttaattaacttcccaaaacataaacacatgcata |
515 |
Q |
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| T |
14870540 |
tacaaatacaatgtttgcatagacattgttacaaaggaaataaacacacttattgaaaatgaccacttaattaacttcccaaaacataaacacatgcata |
14870441 |
T |
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| Q |
516 |
aggtctaacacttagttccaatgtagaatgatgct |
550 |
Q |
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| T |
14870440 |
aggtctaacacttagttccaatgtagaatgatgct |
14870406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 451
Target Start/End: Original strand, 16907767 - 16907866
Alignment:
| Q |
349 |
atgaataacaacgtaataatattgatctaacctctagacaaaggcattattctcaatcagaatttcatacaaatacaatgtttgcatagacattgttaca |
448 |
Q |
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|||| |||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
16907767 |
atgactaacaaaataatattattgatctaacctctagacaaagg-att--tctcaatcagaatttcatacaaatacaatgattacatagacattgttaca |
16907863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 509
Target Start/End: Original strand, 16907922 - 16907954
Alignment:
| Q |
477 |
accacttaattaacttcccaaaacataaacaca |
509 |
Q |
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| T |
16907922 |
accacttaattaacttcccaaaacaaaaacaca |
16907954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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