View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19545_low_7 (Length: 561)
Name: NF19545_low_7
Description: NF19545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19545_low_7 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 13 - 561
Target Start/End: Original strand, 39933987 - 39934535
Alignment:
| Q |
13 |
agcacagatgcaatgtatgtcacaaataatctacatcaagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatg |
112 |
Q |
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| T |
39933987 |
agcacagatgcaatgtatgtcacaaataatctacatccagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatg |
39934086 |
T |
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| Q |
113 |
atttctcatctaagtgaaaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactg |
212 |
Q |
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| T |
39934087 |
atttctcatctaagtgacaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactg |
39934186 |
T |
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| Q |
213 |
taactaattacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttt |
312 |
Q |
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| T |
39934187 |
taactaattacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttt |
39934286 |
T |
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| Q |
313 |
tcatagaatgtaggagagaagaacttatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcata |
412 |
Q |
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| T |
39934287 |
tcatagaatgtaggagagaagaacgtatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcata |
39934386 |
T |
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| Q |
413 |
tttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatctaatacacattatcaaccttgccatgctttctttca |
512 |
Q |
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| T |
39934387 |
tttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttca |
39934486 |
T |
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| Q |
513 |
taacttaaccaatcagtactcctacgaacttggtcaattaaagcagtgc |
561 |
Q |
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| T |
39934487 |
tcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgc |
39934535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 396 - 561
Target Start/End: Complemental strand, 39704652 - 39704487
Alignment:
| Q |
396 |
tcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatctaatacacattatcaacct |
495 |
Q |
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| T |
39704652 |
tcttaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacatgaccaacatccaatacacattatcaacct |
39704553 |
T |
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| Q |
496 |
tgccatgctttctttcataacttaaccaatcagtactcctacgaacttggtcaattaaagcagtgc |
561 |
Q |
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| T |
39704552 |
tgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgc |
39704487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 407 - 561
Target Start/End: Complemental strand, 39695732 - 39695578
Alignment:
| Q |
407 |
ttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatctaatacacattatcaaccttgccatgcttt |
506 |
Q |
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|||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||| |
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| T |
39695732 |
ttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgattt |
39695633 |
T |
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| Q |
507 |
ctttcataacttaaccaatcagtactcctacgaacttggtcaattaaagcagtgc |
561 |
Q |
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| T |
39695632 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgc |
39695578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 553
Target Start/End: Original strand, 39928701 - 39928880
Alignment:
| Q |
374 |
catttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaac |
473 |
Q |
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| T |
39928701 |
catttatcataacatcacatcctcttaaacattttcatacttgtaaggagaagaacaaaataagtaatacacaaagtttatacccccgagtaggactaac |
39928800 |
T |
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| Q |
474 |
atctaatacacattatcaaccttgccatgctttctttcataacttaaccaatcagtactcctacgaacttggtcaattaa |
553 |
Q |
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| T |
39928801 |
atccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaa |
39928880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 39928648 - 39928688
Alignment:
| Q |
309 |
tttttcatagaatgtaggagagaagaacttatcatcattat |
349 |
Q |
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| T |
39928648 |
tttttcatagaatgtaggagaaaagaacttattaccattat |
39928688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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