View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19546_high_1 (Length: 219)
Name: NF19546_high_1
Description: NF19546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19546_high_1 |
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| [»] scaffold0513 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 32792062 - 32792249
Alignment:
| Q |
12 |
gataattctagcaatagtaaaagagtttagtagctgtttacagtctagtataacagtgtcaattgcagcagtgaaactctttcctcagatgcagtttaca |
111 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
32792062 |
gataattctagcaatagtaaaagagtttagtagctatttacagtctagtataacagtgtcaattccagcagtgaaactctttcctaagatgtagtttact |
32792161 |
T |
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| Q |
112 |
acattctcagcaccaagatgcaataatcaagcttgagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
200 |
Q |
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| T |
32792162 |
tcattctcagcatc-agatgcaattatcaagcttgagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
32792249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 50832439 - 50832626
Alignment:
| Q |
12 |
gataattctagcaatagtaaaagagtttagtagctgtttacagtctagtataacagtgtcaattgcagcagtgaaactctttcctcagatgcagtttaca |
111 |
Q |
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| T |
50832439 |
gataattctagcaatagtaaaagagtttagtagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttact |
50832538 |
T |
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| Q |
112 |
acattctcagcaccaagatgcaataatcaagcttgagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
200 |
Q |
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| T |
50832539 |
acattctcagcatc-agatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcataccccatcgcacacctaaa |
50832626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 50843414 - 50843227
Alignment:
| Q |
12 |
gataattctagcaatagtaaaagagtttagtagctgtttacagtctagtataacagtgtcaattgcagcagtgaaactctttcctcagatgcagtttaca |
111 |
Q |
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| T |
50843414 |
gataattctagcaatagtaaaagagtttagtagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttact |
50843315 |
T |
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| Q |
112 |
acattctcagcaccaagatgcaataatcaagcttgagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
200 |
Q |
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| T |
50843314 |
acattctcagcatc-agatgaaattatcaagcttcagatacctctttctagagcagattgcacattgcataccccatcgcacacctaaa |
50843227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 24534238 - 24534425
Alignment:
| Q |
12 |
gataattctagcaatagtaaaagagtttagtagctgtttacagtctagtataacagtgtcaattgcagcagtgaaactctttcctcagatgcagtttaca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
24534238 |
gataattctagcaatagtaaaagagtttagtagctgtttacagtctagtataacagtgtcaattccagcagtgaaactctttcctaagatgcagtttact |
24534337 |
T |
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| Q |
112 |
acattctcagcaccaagatgcaataatcaagcttgagatacctctttctagagcagattgcacattgcagaccccatcgcacacctaaa |
200 |
Q |
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| T |
24534338 |
taattctcagcatc-agatgcaattatcaagcttgagatacctctttctagagcaaattgcacattgcagaccccatcgcacacctaaa |
24534425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 7679 - 7605
Alignment:
| Q |
98 |
agatgcagtttacaacattctcagcaccaagatgcaataatcaagcttgagatacctctttctagagcagattgca |
173 |
Q |
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| T |
7679 |
agatgcagattgctacattctcagcatca-gatgcaataatcaagcttgagatacctctttctagagcagattgca |
7605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 17721006 - 17721046
Alignment:
| Q |
80 |
cagtgaaactctttcctcagatgcagtttacaacattctca |
120 |
Q |
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| T |
17721006 |
cagtgaaactctttcctaagatgcagtttactacattctca |
17721046 |
T |
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