View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19546_low_1 (Length: 517)
Name: NF19546_low_1
Description: NF19546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19546_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 45973694 - 45974204
Alignment:
| Q |
1 |
tctggatcgtattgtctccgtctgggttgcagacttgataagtcgctgtctttatcaaagcttgatgaatcaacccatttatgtttaaagacattcatcg |
100 |
Q |
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| T |
45973694 |
tctggatcgtattgtctccgtctgggttgcagacttgataagtcgctgtctttatcaaagcttgatgaatcaacccatttatgtttaa-gacattcatcg |
45973792 |
T |
|
| Q |
101 |
tgttaaagatggtgagaaacacaaggagaaagggaggag---tttgagattccaaatttttacagaagaacgtgtttgagcaggcaaatattctgtgtag |
197 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
45973793 |
tgttgaagatggtgagaaacacaaggagaaagggaggaggagtttgggattccaaatttttacagaagaacgtgttt---------aatattctgtgcag |
45973883 |
T |
|
| Q |
198 |
tgggtttaacgtggaataaattagagaaggcaaatat----------tttaatcagatggttatgtttcgtttaagtgtgtgactgtgttattttattga |
287 |
Q |
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| T |
45973884 |
tgggtttaacgtggaataaattagagaaggcaaatatataccgttattttaatcagatggttatgtttcgtttaagtgtgtgactgtgttattttattga |
45973983 |
T |
|
| Q |
288 |
atgcagtgaatcacaatccgaattttagttgataagaaagtactcttgtgttttctttcccaccaccaccaccattggcattgactattttgcaactctc |
387 |
Q |
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| T |
45973984 |
atgcagtgaatcacaatccgaattttagttgataagaaagtactcttgtgttttctttcccaccaccaccaccactggcattgactattttgcaactctc |
45974083 |
T |
|
| Q |
388 |
caacccattacaagttaaatcaacagtgcacaatgtcacaagttcacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagt |
487 |
Q |
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| T |
45974084 |
caacccattacaagttaaatcaacagtgcacaatgtcacaagttcacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagt |
45974183 |
T |
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| Q |
488 |
taccagtacctccagtattat |
508 |
Q |
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|||||||||||||| |||||| |
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| T |
45974184 |
taccagtacctccattattat |
45974204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 10946447 - 10946384
Alignment:
| Q |
239 |
atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca |
302 |
Q |
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| T |
10946447 |
atcagatggttttgtattgtttaactgtgtgactgcgtcattttaatgactgcagtgaatcaca |
10946384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 9496905 - 9496993
Alignment:
| Q |
3 |
tggatcgtattgtctccgtctgggttgcagacttgataagtcgct-gtctttatcaaagcttgatgaatcaacc--catttatgtttaa |
88 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
9496905 |
tggatcgtattgtctccgtcttggttgcagacttgatgagttgctaatctttttcaaagcttgatgaatcaacccgcatttatgtttaa |
9496993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 29175904 - 29175841
Alignment:
| Q |
239 |
atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca |
302 |
Q |
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| T |
29175904 |
atcagatggttatgttttgtttgaatgtgtgactgtgtcattttactgactgcagtgagtcaca |
29175841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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