View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19547_high_10 (Length: 310)
Name: NF19547_high_10
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19547_high_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 116 - 310
Target Start/End: Complemental strand, 10852767 - 10852573
Alignment:
| Q |
116 |
gtcaaatcctctttattgaatatccagaaccacaaaaatcaaagttcacatcctctctctcttcccaaatccaatacacgtgcatctcttcttctttccg |
215 |
Q |
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| T |
10852767 |
gtcaaatcctctttattgaatatccagaaccacaaaaatcaaagttcacatcctctctctcttcccaaatccaatacacgtgcatctcttcttctttccc |
10852668 |
T |
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| Q |
216 |
aggttaagcgccgcctctccttctccctctcctaattaccagcgcccccaccgccgacctcctcacattgttcttcaaatcaacagagcaccacc |
310 |
Q |
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| T |
10852667 |
aggttaagcgccgcctctccttctccctctcctaattaccagcgcccccaccgtcgacctcctcacattgttcttcaaatcaacagagcaccacc |
10852573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10852882 - 10852830
Alignment:
| Q |
1 |
tcaacaacaaacaaaattcatctttcacaacaacccaaagaaaattcatatgg |
53 |
Q |
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| T |
10852882 |
tcaacaacaaacaaaattcatctttcacaacaacccaaacaaaattcatatgg |
10852830 |
T |
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