View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19547_low_11 (Length: 300)
Name: NF19547_low_11
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19547_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 10852311 - 10852570
Alignment:
| Q |
18 |
ggtttgagaattgaaatagcttcatcttccctaaacccataaaatcatccacaaatcaaaagttcatcctcaaattcatccccagactcataattaatcc |
117 |
Q |
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| T |
10852311 |
ggtttgagaattgaaatagcttcatcttccctaaacccataaattcatccacaaatcaaaagttcatcctcaaattcatccctagactcataattaatcc |
10852410 |
T |
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| Q |
118 |
ccaaattcagacatttatctttccataaactcaaatctcatcttcaactcacaattccccattttcttctcaacacctcaaactttcgaattgcaatatc |
217 |
Q |
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| T |
10852411 |
ccaaattcagacatttatctttccataaactcaaatctcatcttcaacccacaattccccattttcttctcaacacctcaaactttcgaattgcaatatc |
10852510 |
T |
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| Q |
218 |
aaattagtactacaattttaannnnnnnctcaatcgctgtaaatcaaaacccaaacagta |
277 |
Q |
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| T |
10852511 |
aaattagtactacaattttaatttttttctcaatcgctgtaaatcaaaacccaaacagta |
10852570 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 50488237 - 50488331
Alignment:
| Q |
34 |
tagcttcatcttccctaaacccataaaatcatccacaaatcaaaagttcatcctcaaattcatccccagactcataattaatccccaaattcaga |
128 |
Q |
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|||||||||||||| |||||| ||||| ||||||||||||||| | || ||| ||| ||||||| | || |||||| |||||||||||||||| |
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| T |
50488237 |
tagcttcatcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccctaaacccataatgaatccccaaattcaga |
50488331 |
T |
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