View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19547_low_12 (Length: 294)
Name: NF19547_low_12
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19547_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 23203546 - 23203353
Alignment:
| Q |
42 |
tataaaatgataacatgttgatgtgtataggatgtttaa----agggttgatgcacttaaacctgaattgtttaagacgaagtccttgtttcttcctttc |
137 |
Q |
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| T |
23203546 |
tataaaatagtaacatattgatatgtataagatgtttaatttgagggctgatgcacttaaatctgaattgtttaagagggagtctatgtttcttcttttc |
23203447 |
T |
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| Q |
138 |
ttatagttcaata-----ttgataatttttagtgtttataaatattctgttgatgggatatttgggtttaacttttatgcttatcacaagatat |
226 |
Q |
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| T |
23203446 |
ttatagttcaatatttatttgataatttctagagttcataaaaattctgctgatgggatattggcttttaacttttatccttatcacaagatat |
23203353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 23202877 - 23202795
Alignment:
| Q |
198 |
gtttaacttttatgcttatcacaagatataatttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
284 |
Q |
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| T |
23202877 |
gtttatcttctatgcttatcaca----acaatttattaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
23202795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 9488728 - 9488767
Alignment:
| Q |
245 |
ttgaatttattttaattgtaggttgtgaacgagccctttg |
284 |
Q |
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| T |
9488728 |
ttgaatttattttaattgtaggttgtgaaggagccctttg |
9488767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 13860450 - 13860394
Alignment:
| Q |
228 |
atttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
284 |
Q |
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| T |
13860450 |
atttattaatattgcttttcaatgtattttaattgtaggttgtgaagaagccctttg |
13860394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 13860625 - 13860582
Alignment:
| Q |
92 |
acttaaacctgaattgtttaagacgaagtccttgtttcttcctt |
135 |
Q |
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| T |
13860625 |
acttaaacctgaattgtttaagagggagtccatgtttcttcctt |
13860582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 7687426 - 7687225
Alignment:
| Q |
25 |
ataacattcagattcagtataaaatgataacatgttgatgtgtataggatgt--ttaa----agggttgatgcacttaaacctgaattgtttaagacgaa |
118 |
Q |
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| T |
7687426 |
ataacattcaagttaaatataaaatggtaacaaaatgatgtgtataggatgtgtttaatttgagggtttatggacttaaacctgaattgtttaagagaca |
7687327 |
T |
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| Q |
119 |
gtccttgtttcttcctttcttatagttcaatattgataatttttagtgtttataaatattctgttgatgggatatttgggtttaacttttatgcttatca |
218 |
Q |
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| T |
7687326 |
gtctatgtttctaccttccttatagttcaatattgataatttatagagttcttaaa-gttatgttgatggaatattgtggtttaaattttatgcttatca |
7687228 |
T |
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| Q |
219 |
caa |
221 |
Q |
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||| |
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| T |
7687227 |
caa |
7687225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 7686108 - 7686049
Alignment:
| Q |
225 |
ataatttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
284 |
Q |
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| T |
7686108 |
ataatttcttaatattgcatttgaatttattttgattgtagatcgtgaaggagccctttg |
7686049 |
T |
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