View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19547_low_13 (Length: 289)
Name: NF19547_low_13
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19547_low_13 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 3777406 - 3777146
Alignment:
| Q |
20 |
taatgttgacggtagctacttgggaactcctattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggatat |
119 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3777406 |
taatgttga-ggtagctgcttgggaactcctattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggatat |
3777308 |
T |
|
| Q |
120 |
attacagcaagttctgacatattgtttgccgagctcacagcaatacaccgtggtattcagctggccattgatttaggtattgaagaaatggtttgttact |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3777307 |
attacagcaagttctgacatattgtttgccgagctaacagcaatacaccgtggtattctgctggccattgatttaggtattgaagaaatggtttgttact |
3777208 |
T |
|
| Q |
220 |
cggactccatgatctccattcagctccttactgtgcatgccatcacctaccatgcctatgct |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3777207 |
cggactccatgatctccattcagctccttactgtgcatgccatcacttaccatgcctatgct |
3777146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 19267205 - 19267466
Alignment:
| Q |
20 |
taatgttgacggtagctacttgggaactcctattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggatat |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19267205 |
taatgttgacggtagctgcttgggaactcctattagagcgggttttggtggaatcataagaaattatgcaagtttatttcttaaaggtttctctggatat |
19267304 |
T |
|
| Q |
120 |
attacagcaagttctgacatattgtttgccgagctcacagcaatacaccgtggtattcagctggccattgatttaggtattgaagaaatggtttgttact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19267305 |
attacagcaagttctgacatattgtttgccgagcttacagcaatacaccgtggtattctgctggccattgatttaggtattgaagaaatggtttgttact |
19267404 |
T |
|
| Q |
220 |
cggactccatgatctccattcagctccttactgtgcatgccatcacctaccatgcctatgct |
281 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |
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|
| T |
19267405 |
cggactccatgatctccattcagctcctcactatgcatgccatcacttaccatgcctatgct |
19267466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 40329970 - 40330229
Alignment:
| Q |
21 |
aatgttgacggtagctacttgggaactcctattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggatata |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
40329970 |
aatgttgacggtagctgattgggaactcctattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggctata |
40330069 |
T |
|
| Q |
121 |
ttacagcaagttctgacatattgtttgccgagctcacagcaatacaccgtggtattcagctggccattgatttaggtattgaagaaatggtttgttactc |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||||||| |
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| T |
40330070 |
ttacaacaagttctgacatattgtttgccgagcttacagcaatacaccgtggtattctgctagccattgatttaggtattaacgaaatggtttgttactc |
40330169 |
T |
|
| Q |
221 |
ggactccatgatctccattcagctccttactgtgcatgccatcacctaccatgcctatgct |
281 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||||| |
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| T |
40330170 |
ggactccatgatctccattcagctccttac-gtgcacgcctccacttaccatgcctatgct |
40330229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 35133576 - 35133318
Alignment:
| Q |
21 |
aatgttgacggtagctacttgggaactcctattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggatata |
120 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35133576 |
aatgttgacggtagctgcttgggatctcctattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggctata |
35133477 |
T |
|
| Q |
121 |
ttacagcaagttctgacatattgtttgccgagctcacagcaatacaccgtggtattcagctggccattgatttaggtattgaagaaatggtttgttactc |
220 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
35133476 |
ttacaacaagttatgacatattgtttgccgagcttacagcaatacaccgtggtattctgctgaccattgatttaggtattgacgaaatggtttgttactc |
35133377 |
T |
|
| Q |
221 |
ggactccatgatctccattcagctccttactgtgcatgccatcacctaccatgcctatg |
279 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| ||| |||||| |||||| |
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| T |
35133376 |
agactccatgatctcaattcagctccttactgtgcacgcctccacttaccatacctatg |
35133318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 131 - 281
Target Start/End: Original strand, 41985355 - 41985505
Alignment:
| Q |
131 |
ttctgacatattgtttgccgagctcacagcaatacaccgtggtattcagctggccattgatttaggtattgaagaaatggtttgttactcggactccatg |
230 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||||||||| |
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| T |
41985355 |
ttctgacatattgtttgtcgagcttacaacaatacaccgtggtattctgctggccattgatttaggtattaacaaaatgatttgttactcggactccatg |
41985454 |
T |
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| Q |
231 |
atctccattcagctccttactgtgcatgccatcacctaccatgcctatgct |
281 |
Q |
| |
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||||||||||||||||||| |||||| ||| ||| ||||||||||||||| |
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| T |
41985455 |
atctccattcagctccttattgtgcacgcctccacttaccatgcctatgct |
41985505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 22902350 - 22902105
Alignment:
| Q |
21 |
aatgttgacggtagctacttgggaactcc-tattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggatat |
119 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||| |
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|
| T |
22902350 |
aatgttgatggtagctgcttgggaactccctattagagcgggttttggtggaatcatcagaaattctgcaggtttattccttaaaggtttctctggttat |
22902251 |
T |
|
| Q |
120 |
attacagcaagttctgacatattgtttgccgagctcacagcaatacaccgtggtattcagctggccattgatttaggtattgaagaaatggtttgttact |
219 |
Q |
| |
|
||| || |||||| |||||| |||||||||||||| |||||||| ||||||||||||| ||||||||| |||| || ||| || |||||||||||||||| |
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| T |
22902250 |
atttcaacaagttttgacattttgtttgccgagcttacagcaatccaccgtggtattctgctggccatagattcagatatcgacgaaatggtttgttact |
22902151 |
T |
|
| Q |
220 |
cggactccatg-----atctccattcagctccttactgtgcatgcc |
260 |
Q |
| |
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||||||||||| |||||||||||||||| |||| ||||||| |
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| T |
22902150 |
cggactccatgctctcctctccattcagctcctcactgagcatgcc |
22902105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 79449 - 79709
Alignment:
| Q |
21 |
aatgttgacggtagctacttgggaactcctattagagcgggttttggtggaatcataagaaattatgcaggtttatttcttaaaggtttctctggatata |
120 |
Q |
| |
|
||||| || ||||||| |||||||||||||||| |||| ||||||||||||||||| | | || || ||||||||| | | | ||||||| || ||| |
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|
| T |
79449 |
aatgtggatggtagctgcttgggaactcctattcgagctggttttggtggaatcatccggatttctgtaggtttattcatcacatgtttctccggttatc |
79548 |
T |
|
| Q |
121 |
ttacagcaagttctgacatattgtttgccgagctcacagcaatacaccgtggtattcagctggccattgatttaggtattgaagaaatggtttgttactc |
220 |
Q |
| |
|
|| || ||| ||||||||| ||||| |||||||| ||||||| ||||||||| ||| |||||||| ||| ||||||||| ||||||||||||||||| |
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| T |
79549 |
ttgcaacaacttctgacattttgttagccgagcttgcagcaatccaccgtggtcttcttctggccataaattcaggtattgacgaaatggtttgttactc |
79648 |
T |
|
| Q |
221 |
ggactccatgatctccattcagctccttactgtgcatgccatcacctaccatgcctatgct |
281 |
Q |
| |
|
||| |||||| |||||||| | ||||||| || ||||||| || ||| || ||||||||| |
|
|
| T |
79649 |
ggattccatgctctccattaaactccttaatgagcatgcctccatctatcacgcctatgct |
79709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 47395839 - 47395732
Alignment:
| Q |
132 |
tctgacatattgtttgccgagctcacagcaatacaccgtggtattcagctggccattgatttaggtattgaagaaatggtttgttactcggactccatga |
231 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| || | |||| ||| ||| |||| || | ||| ||||| ||||||||||||||||| | |||||| |
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| T |
47395839 |
tctgacattttgtttgccgagcttactgcaatccatcatggtcttcttctgcccatagaatcaggcattgacgaaatggtttgttactcatattccatgc |
47395740 |
T |
|
| Q |
232 |
tctccatt |
239 |
Q |
| |
|
|||||||| |
|
|
| T |
47395739 |
tctccatt |
47395732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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