View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19547_low_15 (Length: 232)

Name: NF19547_low_15
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19547_low_15
NF19547_low_15
[»] chr2 (5 HSPs)
chr2 (3-232)||(3776940-3777169)
chr2 (3-232)||(19267443-19267672)
chr2 (3-223)||(35133110-35133330)
chr2 (3-223)||(41985491-41985711)
chr2 (58-223)||(40330215-40330380)
[»] chr7 (2 HSPs)
chr7 (3-216)||(22901878-22902091)
chr7 (68-157)||(47869009-47869098)
[»] chr3 (4 HSPs)
chr3 (32-187)||(47395513-47395668)
chr3 (3-124)||(22495104-22495225)
chr3 (123-188)||(11752091-11752156)
chr3 (30-159)||(36834078-36834207)
[»] scaffold0036 (1 HSPs)
scaffold0036 (20-217)||(79701-79898)
[»] chr8 (3 HSPs)
chr8 (30-201)||(8622603-8622774)
chr8 (15-86)||(34708113-34708184)
chr8 (29-137)||(43261482-43261590)
[»] chr1 (2 HSPs)
chr1 (29-159)||(45921052-45921181)
chr1 (33-221)||(28562074-28562262)
[»] scaffold1892 (1 HSPs)
scaffold1892 (89-159)||(374-444)
[»] chr5 (1 HSPs)
chr5 (87-223)||(25787267-25787403)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 3776940 - 3777169
Alignment:
Q  3 taagctctaggataaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtgg 102  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3776940 taagctctagaataaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtgg 3777039  T
Q  103 caccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaag 202  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3777040 caccgagtttagctaaaaaatcagcacactggtttccttctcttaggcaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaag 3777139  T
Q  203 caacacagcataggcatggtaggtgatggc 232  Q
    ||||||||||||||||||||| ||||||||    
T  3777140 caacacagcataggcatggtaagtgatggc 3777169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 19267672 - 19267443
Alignment:
Q  3 taagctctaggataaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtgg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19267672 taagctctaggataaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtgg 19267573  T
Q  103 caccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaag 202  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19267572 caccgagtttagctaaaaaatcagcacactggtttccttctcttaggcaatgatgaacggtgaaattccttgaggacaagagatctttgatgtcttgaag 19267473  T
Q  203 caacacagcataggcatggtaggtgatggc 232  Q
    ||||||||||||||||||||| ||||||||    
T  19267472 caacacagcataggcatggtaagtgatggc 19267443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 35133110 - 35133330
Alignment:
Q  3 taagctctaggataaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtgg 102  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||| |||||| |||||||||||||    
T  35133110 taagctctagggtaaagaactcctaaggcgtcgttcttgatcagtggtagtaggttgcttggagaagtatcataagttgtaaattcatcattcgaagtgg 35133209  T
Q  103 caccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaag 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  35133210 caccgagtttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaatggtgaaattccttgaggacaagagatctctgatatcttgaag 35133309  T
Q  203 caacacagcataggcatggta 223  Q
    ||||||| |||||| ||||||    
T  35133310 caacacaacataggtatggta 35133330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 41985711 - 41985491
Alignment:
Q  3 taagctctaggataaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtgg 102  Q
    ||||||||||| ||||  |||||||||| ||||||||||||||| || || ||||| |||||||||||||||||||||| ||||||||||||||| ||||    
T  41985711 taagctctagggtaaaatactcctaaggtgtcgttcttgatcagtggtagtaggtcacttggagaagtatcataagttgtaaattcttcattcgaggtgg 41985612  T
Q  103 caccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaag 202  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||    
T  41985611 cactgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaaaagatctctgatatcttaaag 41985512  T
Q  203 caacacagcataggcatggta 223  Q
     |||| |||||||||||||||    
T  41985511 taacagagcataggcatggta 41985491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 40330380 - 40330215
Alignment:
Q  58 cgcttggagaagtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatg 157  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40330380 cgcttggagaagtatcataagttgtaaattcttcattcgaagtggcatcgagcttagctaaaaaatcagcacattggtttccttctcttagacaatgatg 40330281  T
Q  158 aacggtgaaattccttgaggacaagagatctctgatgtcttgaagcaacacagcataggcatggta 223  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  40330280 aacggtgaaattccttgaggacaagagatctctgatatcttgaagtaacacagcataggcatggta 40330215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 22901878 - 22902091
Alignment:
Q  3 taagctctaggataaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtgg 102  Q
    ||||||||||  ||||||||||| | |||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||    
T  22901878 taagctctagagtaaagaactcccatggcgtcgttcttaatcagcggaaggaggtcgcttggagaagtatcgtaagttgaaaattcttcattcgaaatgg 22901977  T
Q  103 caccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaag 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||     
T  22901978 caccgagcttagctaaaaaatcagcacaatggtttccttctcttagacaatgatgaacggtgaaattccttgaagacaagagatctttgatatcttgaat 22902077  T
Q  203 caacacagcatagg 216  Q
     || ||||||||||    
T  22902078 taaaacagcatagg 22902091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 47869098 - 47869009
Alignment:
Q  68 agtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatg 157  Q
    |||| ||||||| | ||| |||||||| || ||||| || ||||| || || ||||| | ||||||||| ||||||||||||||||||||    
T  47869098 agtaacataagtagtaaactcttcattagatgtggctcctagctttgcaaagaaatcggtacactggttcccttctcttagacaatgatg 47869009  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 47395513 - 47395668
Alignment:
Q  32 gtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaaaaatcagcacac 131  Q
    |||||||||||||| ||| |||||||||||||||| |||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||     
T  47395513 gtcgttcttgatcacagggagaaggtcgcttggaggagtatcatgagtagaaaattcttcattcgaggtggctccgagcttagctaaaaagtctgcacat 47395612  T
Q  132 tggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatc 187  Q
    || || |||||||| ||||| |||| ||||| |||||| |||| ||| ||||||||    
T  47395613 tgattcccttctctgagacagtgataaacggagaaattgcttgtggaaaagagatc 47395668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 22495225 - 22495104
Alignment:
Q  3 taagctctaggataaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtgg 102  Q
    |||||||||||| | ||||| || | ||||||||||||||| || |||| ||| || ||||||| |||||||| ||| ||||| ||||||||||||||||    
T  22495225 taagctctaggaaacagaacgcccatggcgtcgttcttgataagcggaataagatcacttggaggagtatcattagtagaaaactcttcattcgaagtgg 22495126  T
Q  103 caccgagcttagctaaaaaatc 124  Q
    ||||||| ||||||||||||||    
T  22495125 caccgagtttagctaaaaaatc 22495104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 11752156 - 11752091
Alignment:
Q  123 tcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatct 188  Q
    |||||||| || |||||||||||  ||||||||||||  | |||||| |||| |||||||||||||    
T  11752156 tcagcacattgatttccttctctcggacaatgatgaatcgagaaatttcttgtggacaagagatct 11752091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 36834078 - 36834207
Alignment:
Q  30 gcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaaaaatcagcac 129  Q
    |||||| || |||||| |||||| ||||| ||||||| |||| |||   | | ||||||||||||||| ||||| || |||||||| || || || ||||    
T  36834078 gcgtcgatcctgatcaaaggaaggaggtcacttggaggagtaacatggctggcaaattcttcattcgaggtggctccaagcttagccaagaagtctgcac 36834177  T
Q  130 actggtttccttctcttagacaatgatgaa 159  Q
    | || || |||||||  || ||||||||||    
T  36834178 attgattcccttctccgaggcaatgatgaa 36834207  T

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Target: scaffold0036 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 79898 - 79701
Alignment:
Q  20 aactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaa 119  Q
    |||||| | |||||||||||| ||||  || ||||||||| ||||||||||||||| | | ||||| ||||||||||| ||||||||||||||||||| |    
T  79898 aactcccatggcgtcgttctttatcaacgggagaaggtcgtttggagaagtatcatgaatagaaaactcttcattcgatgtggcaccgagcttagctaga 79799  T
Q  120 aaatcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaagcaacacagcataggc 217  Q
    ||||||||||| ||||| |||||||| || |||||  | | ||   ||||||||| ||| ||||||||  |||| |||||||  || |||||||||||    
T  79798 aaatcagcacattggttcccttctctgagccaatggaggatggatgaattccttgtggataagagatccttgatatcttgaattaatacagcataggc 79701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 8622774 - 8622603
Alignment:
Q  30 gcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaaaaatcagcac 129  Q
    ||||||||||||||||| || | |||||||||||| ||| |||||||||| ||||||||||||||| | ||||||||||| || ||||||| ||| ||||    
T  8622774 gcgtcgttcttgatcagcgggataaggtcgcttggcgaaatatcataagtagaaaattcttcattcaatgtggcaccgagtttggctaaaagatctgcac 8622675  T
Q  130 actggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaa 201  Q
    | || ||  ||||||| || ||||  |||| || |||||||||||  |||||||||||| | || |||||||    
T  8622674 attgattctcttctctgaggcaatagtgaatggagaaattccttgttgacaagagatctttaatatcttgaa 8622603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 34708184 - 34708113
Alignment:
Q  15 taaagaactcctaaggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaat 86  Q
    ||||| ||||||| |  ||||||||||||||| |  || |||||||||||||||||||| ||||||||||||    
T  34708184 taaaggactcctatgatgtcgttcttgatcagcgagaggaggtcgcttggagaagtatcgtaagttgaaaat 34708113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 43261482 - 43261590
Alignment:
Q  29 ggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaaaaatcagca 128  Q
    ||||||||| ||||||| ||| |||| ||||||||||| || |  || ||| ||| |||| |||||||| ||||  || |||||||| || || ||||||    
T  43261482 ggcgtcgtttttgatcaaagggagaaagtcgcttggaggagaaatatgagtagaatattcctcattcgaggtggttccaagcttagccaagaagtcagca 43261581  T
Q  129 cactggttt 137  Q
    || ||||||    
T  43261582 cattggttt 43261590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 45921052 - 45921181
Alignment:
Q  29 ggcgtcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaaaaatcagca 128  Q
    |||||||||| |||||| |||| ||||||||||||||| || | ||| ||| |||||||| |||||||| ||||  |||||||||| ||| || |||| |    
T  45921052 ggcgtcgttcctgatcaaagga-gaaggtcgcttggaggagaaacatgagtagaaaattcctcattcgaggtggttccgagcttagttaagaagtcagta 45921150  T
Q  129 cactggtttccttctcttagacaatgatgaa 159  Q
    || || ||||||||||| |||||||||||||    
T  45921151 cattgatttccttctctgagacaatgatgaa 45921181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 28562074 - 28562262
Alignment:
Q  33 tcgttcttgatcagaggaagaaggtcgcttggagaagtatcataagttgaaaattcttcattcgaagtggcaccgagcttagctaaaaaatcagcacact 132  Q
    ||||||||||||| |||||  |||||   ||| | |||| ||||||| | ||| |||||||| || ||||| || ||||| || || ||||| ||||| |    
T  28562074 tcgttcttgatcaaaggaatgaggtcttctggcggagtaacataagtagtaaactcttcattagatgtggctcctagctttgcaaataaatcggcacatt 28562173  T
Q  133 ggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagatctctgatgtcttgaagcaacacagcataggcatgg 221  Q
    |||| |||||||||||||||||||| | || |||||| ||||  || ||||| ||| ||||||||||||  |  ||| |||||||||||    
T  28562174 ggttcccttctcttagacaatgatggatggagaaatttcttgttgaaaagaggtctttgatgtcttgaattagaacaacataggcatgg 28562262  T

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Target: scaffold1892 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1892
Description:

Target: scaffold1892; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 374 - 444
Alignment:
Q  89 ttcattcgaagtggcaccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaa 159  Q
    ||||||||| ||||||| ||| ||||||||||||||||| || ||||| |||||||| |||||||| ||||    
T  374 ttcattcgatgtggcacagagtttagctaaaaaatcagcccattggttcccttctctgagacaatggtgaa 444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 25787267 - 25787403
Alignment:
Q  87 tcttcattcgaagtggcaccgagcttagctaaaaaatcagcacactggtttccttctcttagacaatgatgaacggtgaaattccttgaggacaagagat 186  Q
    |||||||| |||||||| || | ||| || || ||||| ||||| ||||| |||||||||| |||||| |||| || ||| || ||||  || | ||  |    
T  25787267 tcttcattggaagtggctcctatctttgcaaagaaatctgcacattggttcccttctcttaaacaatggtgaatggagaagtttcttgttgatatgatgt 25787366  T
Q  187 ctctgatgtcttgaagcaacacagcataggcatggta 223  Q
    || ||||||||||||  || ||||| |||||||||||    
T  25787367 ctttgatgtcttgaattaaaacagcgtaggcatggta 25787403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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