View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19547_low_3 (Length: 582)
Name: NF19547_low_3
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19547_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 33 - 572
Target Start/End: Original strand, 41759593 - 41760125
Alignment:
| Q |
33 |
ttgactttgtatttatgataatagtggatataattgtttaataaaatcaatttgataaaattattgatttttcttcaatttataacttattttagtgtgt |
132 |
Q |
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| T |
41759593 |
ttgactttgtatttatgataatagtggatataattgtttaataaaatcaatttgataaaattattgatttttcttcaatttataacttattttagtgtgt |
41759692 |
T |
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| Q |
133 |
gtgaaataacttagctagtataacactcctaataatggaaaacataattttcttttctcttcttgattcgaaccatattcatcacatggtgaagtctaac |
232 |
Q |
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| T |
41759693 |
gtgaaataacttagctagtataacactcctaataatggaaaacataattttcttttctcttcttgattcgaaccatattcatcacatggtgaagtctaac |
41759792 |
T |
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| Q |
233 |
cttttccactgaacacaataagcacatagtattatcaattgaaaagtctttaaattattttcagaaaccaacaaaaataataatagaatcaccctctcca |
332 |
Q |
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| T |
41759793 |
cttttccactgaacacaataagcacatagtattatcaattgaaatgtctttaaattattttcagaaaccaacaaaaataataatagaatcaccctctcca |
41759892 |
T |
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| Q |
333 |
gtacacaccacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactacttacaatctaccaaacctcatt |
432 |
Q |
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| T |
41759893 |
gta-----cacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactacttacaatctaccaaacctcatt |
41759987 |
T |
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| Q |
433 |
tcattctctttctttacagagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattccca |
532 |
Q |
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| T |
41759988 |
tcattctctttcttt--agagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattccca |
41760085 |
T |
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| Q |
533 |
tcttatgaaatttacacaaatattcatttcactatctgtg |
572 |
Q |
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| T |
41760086 |
tcttatgaaatttacacaaatattcatttcactatctgtg |
41760125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 449 - 572
Target Start/End: Original strand, 41794854 - 41794977
Alignment:
| Q |
449 |
cagagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattcccatcttatgaaatttaca |
548 |
Q |
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|||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
41794854 |
cagagtaaacactatggacaatatgtgtcgattaaaattccaaaatatatcaacactgactcaagggatgaaaactcattcaaatctaatgaaatttaca |
41794953 |
T |
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| Q |
549 |
caaatattcatttcactatctgtg |
572 |
Q |
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| T |
41794954 |
caaatattcatttcactatctgtg |
41794977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 41794762 - 41794831
Alignment:
| Q |
341 |
cacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactac |
410 |
Q |
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| T |
41794762 |
cacaccaatcagcactatatataatgagtcattcatgcccttaattcaccaaaccatcctatctcactac |
41794831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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