View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19547_low_5 (Length: 460)
Name: NF19547_low_5
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19547_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 86 - 265
Target Start/End: Original strand, 7793227 - 7793408
Alignment:
| Q |
86 |
aaaccaatgacaccaaagatacaaacaaaaaagatagaatcggtcatgaaaaccaacaaccaacatgtccattatgtcaacaatttaaaca--atactgt |
183 |
Q |
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| T |
7793227 |
aaaccaatgacaccaaagatacaaacaaaaaagatagaatcggtcaagaaaaccaacaaccaacatgcccattatgtcaacaatttaaacaatatactgt |
7793326 |
T |
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| Q |
184 |
catgaagttgaaggcagaagaatgtatactaacctgcttgatatattgtatagaatcacattttaataataaggccttaacc |
265 |
Q |
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| T |
7793327 |
catgaagttgaaggcagaagaatgtatactaaccttcttgatatattgtatagaatcacattttaataataaggccttaacc |
7793408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 90 - 265
Target Start/End: Complemental strand, 7909644 - 7909469
Alignment:
| Q |
90 |
caatgacaccaaagatacaaacaaaaaagatagaatcggtcatgaaaaccaacaaccaacatgtccattatgtcaacaatttaaacaatactgtcatgaa |
189 |
Q |
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| T |
7909644 |
caatgaaaccgaagaaacaaacaaaaaagatagaatcggtcatgaaaaccaacaaccaacatgccaattatgtcaactatttaaaccatactgccatgaa |
7909545 |
T |
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| Q |
190 |
gttgaaggcagaagaatgtatactaacctgcttgatatattgtatagaatcacattttaataataaggccttaacc |
265 |
Q |
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| T |
7909544 |
gtagaaggcagaagaatgtatactaacctgcttgatatattgtatagaatcacattttaataacaagaccttaacc |
7909469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 7778689 - 7778760
Alignment:
| Q |
347 |
cgatgaagaacattatgaaaatgattatgatacaagctaactcaaaaatagcagaaaaattaaagtctgcta |
418 |
Q |
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| T |
7778689 |
cgatgaagaacattatgaaaatgattatgatacaagctaactcaaaaatagcagaaaaattgaagtctgcta |
7778760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 7778495 - 7778573
Alignment:
| Q |
95 |
acaccaaagatacaaacaaaaaagatagaatcggtcatgaaaaccaacaa-ccaacatgtccattatgtcaacaattta |
172 |
Q |
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| T |
7778495 |
acaccaaatatacaaacaaaaaagatagaatcggtcatgaaaaccaacaacccaacatgcccattatgtcaactattta |
7778573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 7772721 - 7772785
Alignment:
| Q |
95 |
acaccaaagatacaaacaaaaaagatagaatcggtcatgaaaaccaacaaccaacatgtccatta |
159 |
Q |
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| T |
7772721 |
acaccaaatatacaaacaaaaaagatagaatcggtcatgaaaaccaacaaccaacatgcccatta |
7772785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 7772786 - 7772845
Alignment:
| Q |
193 |
gaaggcagaagaatgtatactaacctgcttgatatattgtatagaatcacattttaataa |
252 |
Q |
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| T |
7772786 |
gaaggcagaagagtttatactaacctgcttgatatattgtatagaatcacattttaataa |
7772845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 7816472 - 7816520
Alignment:
| Q |
370 |
attatgatacaagctaactcaaaaatagcagaaaaattaaagtctgcta |
418 |
Q |
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| T |
7816472 |
attatgatacaagctaactcaaaaatagcagaaaaattaaagtctgcta |
7816520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 7793462 - 7793505
Alignment:
| Q |
401 |
aaaaattaaagtctgctaagaatctatgattcaggccaaatgtc |
444 |
Q |
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| T |
7793462 |
aaaaattaaagtctgctaagaatctatgattcaggccaaatgtc |
7793505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 7906350 - 7906312
Alignment:
| Q |
227 |
tattgtatagaatcacattttaataataaggccttaacc |
265 |
Q |
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| T |
7906350 |
tattgtatagaatcacatttgaataataaggccttaacc |
7906312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 7905817 - 7905750
Alignment:
| Q |
370 |
attatgatacaagctaactcaaaaatagcagaaaaattaaagtctgcta-agaatctatgattcaggc |
436 |
Q |
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| T |
7905817 |
attatgatacaggctaacacaaaaatagcacataaattaaaacctgcaagagaatctatgattcaggc |
7905750 |
T |
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