View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19547_low_6 (Length: 421)
Name: NF19547_low_6
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19547_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 82 - 405
Target Start/End: Original strand, 29974738 - 29975061
Alignment:
| Q |
82 |
gaatatcctagtcgcaagtcaagaaacacattagttcaagttcaaagaagacatatgttcaaaagttcataatcaatctcatatacgaagttcaagatca |
181 |
Q |
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| T |
29974738 |
gaatatcccaatggcacgtcaagaaacactttggttcaagttcaaagaaggcatatgttcaaaagttcataatcaatctcatatacaaagttcaagatca |
29974837 |
T |
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| Q |
182 |
aattttgagatcataattgaaatcaagggtactttagattgcaagttaagtagatcaatattgcaggtcaaaattacaacagattgaaatcttgaagatc |
281 |
Q |
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| T |
29974838 |
aattttgagatcataattgaaatcaagggtactttagattgcaagtcaagtagatcaatattgcaagtcaaaattacaacagattgaaatcttgaagatc |
29974937 |
T |
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| Q |
282 |
acaatgtccttcgtaaaggtaaattcattgtacgccaaattgaatgatgaaaaaacatagctaatgtgtgctataagatcatgttcttggattagaaatt |
381 |
Q |
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| T |
29974938 |
acaatgtccttcgtaaaggtaaattcattgtacgccaaattgaatgatgaaaaaacatagctaatgtgtgctataagatcatgttcttggattagaaatt |
29975037 |
T |
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| Q |
382 |
aagatacaaatcacgaggcataac |
405 |
Q |
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| T |
29975038 |
aagatacaaatcacgaggcataac |
29975061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 29974738 - 29974802
Alignment:
| Q |
12 |
gaatatcccaatggcaagtcaagaaacactttagttcaagtttaaagaaggcatcagttcaaaag |
76 |
Q |
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| T |
29974738 |
gaatatcccaatggcacgtcaagaaacactttggttcaagttcaaagaaggcatatgttcaaaag |
29974802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 16173773 - 16173731
Alignment:
| Q |
172 |
ttcaagatcaaattttgagatcataattgaaatcaagggtact |
214 |
Q |
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| T |
16173773 |
ttcaagatcaaattttgagatcgaaattgaaatcaagggtact |
16173731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 28415368 - 28415316
Alignment:
| Q |
155 |
caatctcatatacgaagttcaagatcaaattttgagatcataattgaaatcaa |
207 |
Q |
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||||||||| ||| |||| |||||||||||||||||| | |||||||||||| |
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| T |
28415368 |
caatctcatctacaaagtcaaagatcaaattttgagattagaattgaaatcaa |
28415316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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