View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19547_low_7 (Length: 371)
Name: NF19547_low_7
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19547_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 3428478 - 3428132
Alignment:
| Q |
7 |
aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatagagggaaagttaggagat |
106 |
Q |
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| T |
3428478 |
aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatatagggaaagttaggagat |
3428379 |
T |
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| Q |
107 |
caaggagcaaaaacattccttaattggtttctgcaagagctttttgagtaagacatttgaagtttttctacacaaaattagtcatcagtgagaccaagtt |
206 |
Q |
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| T |
3428378 |
caaggagcaaaaacattccttaattggtttctgcaagagctttttgagtaagacatttgaagtttttctacacaaaattagtcatcagtgagaccaagtt |
3428279 |
T |
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| Q |
207 |
tattcatagcctttgtaacgcatattatcagttcaacaaaaaatatcggattcaacaactgcaatatgattaaacatgctctgtctatttggatctaatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
3428278 |
tattcatagcctttgtaacgcatattatcagttcaacaaaaaatatcggattcaacaactgcaatatgattaaacatactttgtctatttggatctaatg |
3428179 |
T |
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| Q |
307 |
gagtagcaaatgtgtgagctagggtatgaactgctgacacttgaatg |
353 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428178 |
gagtggcaaatgtgtgagctagggtatgaactgctgacacttgaatg |
3428132 |
T |
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