View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19547_low_8 (Length: 329)

Name: NF19547_low_8
Description: NF19547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19547_low_8
NF19547_low_8
[»] chr8 (1 HSPs)
chr8 (13-311)||(37253320-37253619)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 37253619 - 37253320
Alignment:
Q  13 aatataaaatagctgaaaacataagtttcgacttaatgaatttttatttgacagacaataacaagaattattaaaaatttacagaaataaataaattgag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37253619 aatataaaatagctgaaaacataagtttcgacttaatgaatttttatttgacagacaataacaagaattattaaaaatttacagaaataaataaattgag 37253520  T
Q  113 aaatcgagatcggaattcctgttagagtgttcttcctataaatttgagaaatat----tagtagttgaattaagatttgtggagtgagtaaataacctga 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    |||| |||||||||||||||||||||||||| ||||||||||    
T  37253519 aaatcgagatcggaattcctgttagagtattcttcctataaatttgagaaatattagttagttgttgaattaagatttgtggagtgagt-aataacctga 37253421  T
Q  209 acctccacctcaaaaaataacc---tctttactcttttcagatatgtaccgtaccggtgctaaacgtaagcatacacacacattgccactatcacatcaa 305  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||    
T  37253420 acctccacctcaaaaaataacctcttctttactc-tttcagatatgtaccgtaccggtgctaaacgtaagcat----acacattgctactatcacatcaa 37253326  T

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