View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19548_high_11 (Length: 279)

Name: NF19548_high_11
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19548_high_11
NF19548_high_11
[»] chr4 (3 HSPs)
chr4 (13-264)||(36915300-36915549)
chr4 (103-153)||(2982371-2982421)
chr4 (122-178)||(38475109-38475165)
[»] chr3 (5 HSPs)
chr3 (108-181)||(33057440-33057513)
chr3 (122-160)||(7023161-7023199)
chr3 (122-163)||(31566304-31566345)
chr3 (122-162)||(51450809-51450849)
chr3 (122-162)||(52136327-52136367)
[»] chr8 (3 HSPs)
chr8 (103-175)||(30453876-30453948)
chr8 (122-180)||(29520485-29520543)
chr8 (108-182)||(23492021-23492095)
[»] chr5 (4 HSPs)
chr5 (123-182)||(39668825-39668884)
chr5 (125-174)||(26916219-26916268)
chr5 (122-162)||(2078583-2078623)
chr5 (124-166)||(26916284-26916326)
[»] chr2 (5 HSPs)
chr2 (123-180)||(23714926-23714983)
chr2 (123-180)||(24102598-24102655)
chr2 (124-174)||(43920826-43920876)
chr2 (122-162)||(1648020-1648060)
chr2 (122-162)||(37520603-37520643)
[»] chr1 (3 HSPs)
chr1 (122-179)||(6985656-6985713)
chr1 (122-162)||(49350516-49350556)
chr1 (122-162)||(52920991-52921031)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 36915549 - 36915300
Alignment:
Q  13 attatactcaagctatacagtgtgttactttcgattgatgatctagcattcatattctattgtatttgatccatgttatagagagtcaacttacattggt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  36915549 attatactcaagctatacagtgtgttactttcgattgatgatctagcattcatattatattgtatttgatccatgttatagag--tcaacttacattggt 36915452  T
Q  113 tgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaacagaaagttaccattcatgaacttctcattcc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36915451 tgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaacagaaagttaccattcatgaacttctcattca 36915352  T
Q  213 ttctgctgcacatctaccttacccccatacctatatgatagaggatgttagt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36915351 ttctgctgcacatctaccttacccccatacctatatgatagaggatgttagt 36915300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 2982371 - 2982421
Alignment:
Q  103 ttacattggttgtcgactacctaacacaaccctctccttttatctgggctt 153  Q
    ||||| ||| ||| ||||||||||| |||||||||||||||||| ||||||    
T  2982371 ttacaatggctgttgactacctaactcaaccctctccttttatccgggctt 2982421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 38475109 - 38475165
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggct 178  Q
    |||||||||| ||||| |||| || ||||||| | |||||||||| |||||||||||    
T  38475109 cctaacacaagcctcttctttcatttgggcttggaaccggctatgcatagcaaggct 38475165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 33057513 - 33057440
Alignment:
Q  108 ttggttgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaac 181  Q
    |||| |||||||| ||||||||||| ||||||||||||| | |||| |||||||||||| ||||||||||||||    
T  33057513 ttggctgtcgactgcctaacacaactctctccttttatcagagcttgggaccggctatgcatagcaaggctaac 33057440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 7023199 - 7023161
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccg 160  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  7023199 cctaacacaaccctctccttttacctgggcttgggaccg 7023161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 31566304 - 31566345
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggct 163  Q
    ||||||||||||||||||||||| | |||||| |||||||||    
T  31566304 cctaacacaaccctctccttttacccgggcttgggaccggct 31566345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 51450809 - 51450849
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggc 162  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  51450809 cctaacacaaccctctccttttacccgggcttgggaccggc 51450849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 52136367 - 52136327
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggc 162  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  52136367 cctaacacaaccctctccttttacccgggcttgggaccggc 52136327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 30453876 - 30453948
Alignment:
Q  103 ttacattggttgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaag 175  Q
    |||| ||||||||| ||| ||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  30453876 ttacgttggttgtcaactgcctaacacaaccctctctttttatccgggcttgggaccggctatgcatagcaag 30453948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 29520543 - 29520485
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaa 180  Q
    ||||||||||||||||||||||| | |||||| ||||| |||||| |||||||||||||    
T  29520543 cctaacacaaccctctccttttacccgggcttgggaccagctatgtatagcaaggctaa 29520485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 23492021 - 23492095
Alignment:
Q  108 ttggttgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaaca 182  Q
    |||||||| |||| ||||||||||| |||||||||||| ||||||| |||  | ||||| ||| |||||||||||    
T  23492021 ttggttgttgacttcctaacacaactctctccttttatatgggcttgggatagactatgcatatcaaggctaaca 23492095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 39668825 - 39668884
Alignment:
Q  123 ctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaaca 182  Q
    |||||||||||||| ||||||| | |||||| |||||||||||| |||||||||||||||    
T  39668825 ctaacacaaccctcaccttttacccgggcttgggaccggctatgtatagcaaggctaaca 39668884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 26916268 - 26916219
Alignment:
Q  125 aacacaaccctctccttttatctgggctttggaccggctatgaatagcaa 174  Q
    ||||||||||||||| |||| |||||||| |||||||||||| |||||||    
T  26916268 aacacaaccctctccgtttacctgggcttgggaccggctatgcatagcaa 26916219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 2078583 - 2078623
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggc 162  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  2078583 cctaacacaaccctctccttttatccgggcttgggaccggc 2078623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 26916326 - 26916284
Alignment:
Q  124 taacacaaccctctccttttatctgggctttggaccggctatg 166  Q
    |||||||||||||||||| || |||||||| ||||||||||||    
T  26916326 taacacaaccctctccttctacctgggcttgggaccggctatg 26916284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 23714926 - 23714983
Alignment:
Q  123 ctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaa 180  Q
    ||||||||||||||| |||||| |||| ||| ||||||||||||||||| ||||||||    
T  23714926 ctaacacaaccctcttcttttacctggacttgggaccggctatgaatagtaaggctaa 23714983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 24102598 - 24102655
Alignment:
Q  123 ctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaa 180  Q
    ||||||||||||||| |||||| |||| ||| ||||||||||||||||| ||||||||    
T  24102598 ctaacacaaccctcttcttttacctggacttgggaccggctatgaatagtaaggctaa 24102655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 43920826 - 43920876
Alignment:
Q  124 taacacaaccctctccttttatctgggctttggaccggctatgaatagcaa 174  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||| |||||||    
T  43920826 taacacaaccctctccttttacctgggattttgaccggctatgcatagcaa 43920876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 1648060 - 1648020
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggc 162  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  1648060 cctaacacaaccctctccttttacccgggcttgggaccggc 1648020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 37520643 - 37520603
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggc 162  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  37520643 cctaacacaaccctctccttttacccgggcttgggaccggc 37520603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 6985656 - 6985713
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggcta 179  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||  ||||||||||||    
T  6985656 cctaacacaaccctctcctttcatccgggcttgggaccggctattcatagcaaggcta 6985713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 49350516 - 49350556
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggc 162  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  49350516 cctaacacaaccctctccttttacctgggcttgggaccggc 49350556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 52921031 - 52920991
Alignment:
Q  122 cctaacacaaccctctccttttatctgggctttggaccggc 162  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  52921031 cctaacacaaccctctccttttacccgggcttgggaccggc 52920991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University