View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19548_high_2 (Length: 798)
Name: NF19548_high_2
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19548_high_2 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 14 - 582
Target Start/End: Complemental strand, 28958 - 28384
Alignment:
| Q |
14 |
caaaggcatggagaggagatgttcgagaaactaccggaaacggtgtaaatttcttctatgatggacaaggtttcatgtctgttcaattgactagaacaga |
113 |
Q |
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| T |
28958 |
caaaggcatggagaggagacgttcgagaaactaccggaaacggtgtaaatttcttctatgatggacaaggtttcatgtctgttcaattgactagaacaga |
28859 |
T |
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| Q |
114 |
tgcaaacattgtgttctatgatgtttctggccaggttttgcacaaaaccacttcatcaaagcagctacattcttccatataaagttcagaacatgtataa |
213 |
Q |
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| T |
28858 |
tgcaaacattgtgttctatgatgtttctggccaggttttgcacaaaaccacttcatcaaagcagctacattcttccatataaagttcagaacatgtataa |
28759 |
T |
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| Q |
214 |
gatcgatagaaagaaaatgagattaaaaaggttttggggactataggattggttttcaaattcaagtcaccaattcttgaatacattactataagttgta |
313 |
Q |
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| T |
28758 |
gatcgatagaaagaaaatgagattaaaaaggttttggggactataggattggtttttaaattcaagtcaccaattcttgaatacattactataagttgta |
28659 |
T |
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| Q |
314 |
tatatatttctattgcttaggattttcatgatttgaaattttgaagttctatttcttggtatattgtattttgtaaataaatattttgaatggatgagtt |
413 |
Q |
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| T |
28658 |
tatatatttctattgcttaggattttcatgatttgaaattttgaagttctatttcttggtatattgtattttgtaaataaatattttgaatggatgagtt |
28559 |
T |
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| Q |
414 |
ttactagaagttcatgtgttttattttggattttagaattacctaccagtttaa------nnnnnnnnnnnnnnnncttttgaatcaaattggcataaca |
507 |
Q |
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| T |
28558 |
ttactagaagttcatgtgttttattttggattttagaattacctaccagtgtaagggtgtgtgtgtgtgtatgtgtcttttgaatcaaattggcataaca |
28459 |
T |
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| Q |
508 |
atcactatgtcaagaagtttcatcataatcttagtgttctaaattttgtatagaacaaatcaaaatttaaatata |
582 |
Q |
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| T |
28458 |
atcactatgtcaagaagtttcatcataatcttagtgttctaaattttgtatagaacaaatcaaaatttaaatata |
28384 |
T |
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