View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19548_high_6 (Length: 356)
Name: NF19548_high_6
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19548_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 195 - 338
Target Start/End: Original strand, 52051335 - 52051478
Alignment:
| Q |
195 |
atggatttccgtaaatatgtcagagacaagaaatgccagagatgcagcagaagaggtgcagtcataataataagagttcagagagaaaatagaaagagaa |
294 |
Q |
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| T |
52051335 |
atggatttccgtaaatatgtcagagacaagaaatgccagagatgcagcagaagaggtgcagtcataataataagagttcagagagaaaatagaaagagaa |
52051434 |
T |
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| Q |
295 |
aaatagcattggcatgcaccaccactgtaatcacaaccattagt |
338 |
Q |
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| T |
52051435 |
aaatagcattggcatgcaccaccactgtaatcacaaccattagt |
52051478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 52051152 - 52051285
Alignment:
| Q |
12 |
aaaggaacagaaaaagtaaaatgagttagtagcagtaaaagctcaaacccgtacaatcttacttctgatacagaggcattaccaactctcttcaaatagt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52051152 |
aaaggaacagaaaaagtaaaatgagttagtagcagtaaaagctcaaacccgtacaatcttacttctgagacagaggcattaccaactctcttcaaatagt |
52051251 |
T |
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| Q |
112 |
ttcaatatacaatcaataatactaataataacta |
145 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52051252 |
ttcaatatacaatcaataatactaataataacta |
52051285 |
T |
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