View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19548_high_8 (Length: 306)
Name: NF19548_high_8
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19548_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 12060732 - 12060908
Alignment:
| Q |
10 |
attattctcccaaacaaaaagcggacgacaccaagagaataaccaattactctccatcgttctaaaaccccccaaattacccacatcgacattacttaca |
109 |
Q |
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| T |
12060732 |
attattctcccaaacaaaaaacggacgacaccaagagaataaccaattactctccatcgttctaaaaccccccaaattacccacatcgacattacttaca |
12060831 |
T |
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| Q |
110 |
agagttagggttcggactttgaattcttcatttctccgtacttaaagtatttgaattaaactattagactacttgat |
186 |
Q |
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| T |
12060832 |
agatttagggttcggactttgaattctccatttttccgtacttaaagtatttaaatttaactattagactacttgat |
12060908 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 12060974 - 12061004
Alignment:
| Q |
258 |
ctgtgtttgctaattcttcaaacaacaatca |
288 |
Q |
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| T |
12060974 |
ctgtgtttgctaattcttcaaacaacaatca |
12061004 |
T |
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