View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19548_low_10 (Length: 296)
Name: NF19548_low_10
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19548_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 2012331 - 2012069
Alignment:
| Q |
17 |
aggaatgcccatggaaatccaaattcagctcacagttactaattctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtg |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012331 |
aggactgcccatggaaatccaaattcagctcacagttactaattctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtg |
2012232 |
T |
|
| Q |
117 |
gccttggtggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctatatatacttttgtgcagcagctagtacactgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012231 |
gccttggtggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctatatatacttttgtgcagcagctagtacactgg |
2012132 |
T |
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| Q |
217 |
cttggagcttctacttgcctaagttggatgaggaaacaacatgtgagtacagagatcttccag |
279 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2012131 |
cttggagcttctatttgcctaagttggatgaggaaacaacatgtgagtacagagatctcccag |
2012069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 2008708 - 2008461
Alignment:
| Q |
25 |
ccatggaaatccaaattcagctcacagttactaattctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtggccttggt |
124 |
Q |
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||||||||| |||||||| |||||| | ||||| |||||||||||||| ||| ||| |||||||||| | ||| | ||||||||||||||||| || |
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| T |
2008708 |
ccatggaaagccaaattctcctcacactgactaactctctcccatatttacatcagggattgaagtctttggctaaagaaattccccttgtggccttagt |
2008609 |
T |
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| Q |
125 |
ggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctatatatacttttgtgcagcagctagtacactggcttggagc |
224 |
Q |
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| T |
2008608 |
ggttgatgctttttctgttgaagtactaaatattggtaaggaactcaacatgttgtcttatatatacttcccttcagctgctactacacttgcttggtgc |
2008509 |
T |
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| Q |
225 |
ttctacttgcctaagttggatgaggaaacaacatgtgagtacagagat |
272 |
Q |
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||||| ||||||||| |||||||||||||| |||||||||| |||||| |
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| T |
2008508 |
ttctatttgcctaagctggatgaggaaacatcatgtgagtatagagat |
2008461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 272
Target Start/End: Original strand, 1968342 - 1968554
Alignment:
| Q |
60 |
tctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtggccttggtggttgatgcttttgctgttgaagcactaaactttg |
159 |
Q |
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|||||||||||||| || || || ||||||||| | ||| || | ||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| |
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| T |
1968342 |
tctctcccatatttacacgacgctttgaagtctttggctatagaaagtcctcttgtggccttggtggttgattcttttgctgttgaagtactaaatattg |
1968441 |
T |
|
| Q |
160 |
ctaaagaattcaacatgttgtcctatatatacttttgtgcagcagctagtacactggcttggagcttctacttgcctaagttggatgaggaaacaacatg |
259 |
Q |
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||| ||| ||||||||||||| ||| ||||||| |||||| |||| |||||| ||||||||| |||| ||||||||| |||||||||||||| |||| |
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| T |
1968442 |
gtaaggaactcaacatgttgtcttatgtatacttccctgcagctgctactacacttgcttggagcatctatttgcctaagctggatgaggaaacatcatg |
1968541 |
T |
|
| Q |
260 |
tgagtacagagat |
272 |
Q |
| |
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|||||| |||||| |
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| T |
1968542 |
tgagtatagagat |
1968554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 2005328 - 2005088
Alignment:
| Q |
25 |
ccatggaaatccaaattcagctcacagttactaattctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtggccttggt |
124 |
Q |
| |
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||||||||| |||||| || |||||| | | ||| |||||||||||||| ||| |||| ||||||||| | ||| | |||||||||||||||||||| |
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| T |
2005328 |
ccatggaaagccaaatgcacctcacactgaataactctctcccatatttacatcaggctttgaagtctttggctaaagaaattccccttgtggccttggt |
2005229 |
T |
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| Q |
125 |
ggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctatatatacttttgtgcagcagctagtacactggcttggagc |
224 |
Q |
| |
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||||||| |||||| |||||||||| | ||| ||| ||||||||||||||||||||||| |||| | |||| |||| |||||| ||||||| | |
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| T |
2005228 |
ggttgattgttttgcatttgaagcactgagtattggtaaggaattcaacatgttgtcctatatttactaccctacagctgctactacacttgcttggatc |
2005129 |
T |
|
| Q |
225 |
ttctacttgcctaagttggatgaggaaacaacatgtgagta |
265 |
Q |
| |
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||||| ||||||||||||||||| |||||| |||||||||| |
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| T |
2005128 |
ttctatttgcctaagttggatgaagaaacatcatgtgagta |
2005088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 2019094 - 2018936
Alignment:
| Q |
36 |
caaattcagctcacagttactaattctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtggccttggtggttgatgctt |
135 |
Q |
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||||||||||||||||| | | | || || |||| | | ||| |||| |||||||| | ||||||||| ||| |||| ||||||||||||||| | | |
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| T |
2019094 |
caaattcagctcacagtaattcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgattcat |
2018995 |
T |
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| Q |
136 |
ttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctatatatacttt |
194 |
Q |
| |
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| || | || |||||| | ||||||||||| |||||||||||||||||| | |||||| |
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| T |
2018994 |
tagcaatcgatgcactagattttgctaaagagttcaacatgttgtcctatgtttacttt |
2018936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 1962794 - 1962867
Alignment:
| Q |
112 |
ttgtggccttggtggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctat |
185 |
Q |
| |
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|||| ||||||||||||||||| || || |||| |||||| | |||||||| ||||||||| ||||||||||| |
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| T |
1962794 |
ttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctat |
1962867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 1962919 - 1962961
Alignment:
| Q |
237 |
aagttggatgaggaaacaacatgtgagtacagagatcttccag |
279 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
1962919 |
aagttggataaggaaacttcatgtgagtacagagatcttccag |
1962961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 18189674 - 18189925
Alignment:
| Q |
28 |
tggaaatccaaattcagctcacagttactaattctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtggccttggtggt |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |
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| T |
18189674 |
tggaaatccaaattcagctcacagttactaattctctcccatatttacatgaggcattgaagactcttgctttatggactccccttgtggccttggtggt |
18189773 |
T |
|
| Q |
128 |
tgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctatatatacttttgtgcagcagctagtacactggcttggagcttc |
227 |
Q |
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| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18189774 |
tcatgcttttgctgtcgaagcactaaactatgctaaagaattcaacatgttatcctatatatacttctgtgcagcagctagtacactggcttggagcttc |
18189873 |
T |
|
| Q |
228 |
tacttgcctaagttggatgaggaaacaacatgtgagtacagagatcttccag |
279 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
18189874 |
tatttgcctaagttggatgaggaaacaacatgtgagtacagaaatctaccag |
18189925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 5901922 - 5902046
Alignment:
| Q |
61 |
ctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtggccttggtggttgatgcttttgctgttgaagcactaaactttgc |
160 |
Q |
| |
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|||| |||||||| ||| |||||||||| || | ||||||||| ||||| |||||| ||||||||||| |||| ||| ||||||||| | || || |
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| T |
5901922 |
ctctgccatatttacatcaggcattgaactccttaactttaaggactccccctgtggcactggtggttgattctttatctgccgaagcactagatttggc |
5902021 |
T |
|
| Q |
161 |
taaagaattcaacatgttgtcctat |
185 |
Q |
| |
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||| || |||||||||||||||||| |
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|
| T |
5902022 |
taaggagttcaacatgttgtcctat |
5902046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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