View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19548_low_13 (Length: 268)
Name: NF19548_low_13
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19548_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 40184268 - 40184504
Alignment:
| Q |
13 |
gtgagatgaacgggttgagatggtgagtattaggtgagacgaaacgagttaactccttgaactcgttgttaaccaggtcgaataattcaatgtgacggaa |
112 |
Q |
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| T |
40184268 |
gtgagataaacgggttgagatggtgagtattaggtgagacgaaacgagttaactccttgaactcgttgttaaccaggtcgaataattcaatgtgacggaa |
40184367 |
T |
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| Q |
113 |
gttagagccaggtcttctcgttgcgacggcgatgaatttgttgtttcccggtgaagttgccggtgtgaatacgtgtaaacccggtggggtaactcgttcg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40184368 |
gttagagccaggtcttctcgttgcgacggcgatgaatttgttgtttcccggtgaagttgccggtgtgaatacgtgtaaacccggtggggtaactcgttcg |
40184467 |
T |
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| Q |
213 |
atgagaacagagtaagaagaatcagtggtgagaattg |
249 |
Q |
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| T |
40184468 |
atgagaacagagtaagaagaatcagtggtgagaattg |
40184504 |
T |
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