View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19548_low_3 (Length: 478)
Name: NF19548_low_3
Description: NF19548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19548_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 39996880 - 39996422
Alignment:
| Q |
1 |
accagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccacttgccgg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39996880 |
accagcccccaaaaaactggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccacttgccgg |
39996781 |
T |
|
| Q |
101 |
tcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatccgaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39996780 |
tcgtttacactcgaaaggaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatccgaacta |
39996681 |
T |
|
| Q |
201 |
ggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttatcgttcaactca |
300 |
Q |
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| T |
39996680 |
ggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttatctttcaactca |
39996581 |
T |
|
| Q |
301 |
caaattttaactgcggtgtagttagtattagtttgttaatctcacacacagttgctgatggaccaagcgcgttacatttcatttttgagtgggctcggat |
400 |
Q |
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| T |
39996580 |
caaattttaattgcggtgtagttagtattagtttgttaatctcacacgcagttgctgatggaccaagcgcgttgcatttcatttttgagtgggctcggat |
39996481 |
T |
|
| Q |
401 |
tgcacgtggtgagcctttgaaaatggtgccaaggtttctcgatacaaacatgttgtcgc |
459 |
Q |
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| T |
39996480 |
tgcacgtggtgagcctttgaaaatggtgccaaggtttctcgatacaaacatgttgtcgc |
39996422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 53036720 - 53037130
Alignment:
| Q |
6 |
cccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccacttgccggtcgtt |
105 |
Q |
| |
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|||||| |||| |||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
53036720 |
cccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccactagccggtcgtt |
53036819 |
T |
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| Q |
106 |
tacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatccgaactaggtga |
205 |
Q |
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|||| | ||||| || |||||||||||| | ||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||| |
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| T |
53036820 |
tacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatccgaactaggtga |
53036919 |
T |
|
| Q |
206 |
cttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttatcgttcaactcacaaat |
305 |
Q |
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|||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |||||| ||||| |||||| ||||||| ||||| ||||||||| |
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| T |
53036920 |
cttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaagacattccattggttattgttcagctcacaaat |
53037019 |
T |
|
| Q |
306 |
tttaactgcggtgtagttagtattagtttgttaatctcacacacagttgctgatggaccaagcgcgttacatttcatttttgagtgggctcggattgcac |
405 |
Q |
| |
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|| || || |||| | ||| ||||||||||||||||||||| | |||||||||||||||||||| || ||||||| || ||||||||| || |||| | |
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| T |
53037020 |
ttcaaatgtggtggtgctagcattagtttgttaatctcacacgcggttgctgatggaccaagcgcattgcatttcacttctgagtgggcacgacttgcgc |
53037119 |
T |
|
| Q |
406 |
gtggtgagcct |
416 |
Q |
| |
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|||| |||||| |
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|
| T |
53037120 |
gtggcgagcct |
53037130 |
T |
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